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  5. Smo141299

Smo141299


Description : DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana


Gene families : OG0002233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002233_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo141299

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00265580 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00018p00168540 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH1, mitochondrial... 0.04 OrthoFinder output from all 47 species
Aob_g04468 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020629.149 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01038675001 No alias DNA mismatch repair protein MSH1, mitochondrial... 0.02 OrthoFinder output from all 47 species
LOC_Os04g58410.1 LOC_Os04g58410 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp2g11550.1 No alias DNA mismatch repair protein MSH1, mitochondrial... 0.03 OrthoFinder output from all 47 species
Ore_g19502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012571_P001 Zm00001e012571 DNA mismatch repair protein MSH1, mitochondrial... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002625 Smr_dom 754 824
No external refs found!