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  5. Smo123298

Smo123298 (OTP84)


Aliases : OTP84

Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo123298
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.04 OrthoFinder output from all 47 species
AMTR_s00025p00155620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
AT4G14050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G18520 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g072273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17019 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34224 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30199 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08304 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08005.t1 Aspi01Gene08005 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18385.t1 OTP82, Aspi01Gene18385 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34109.t1 Aspi01Gene34109 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0880.g091024 No alias not classified & original description: CDS=182-3622 0.03 OrthoFinder output from all 47 species
Azfi_s1756.g106494 No alias not classified & original description: CDS=1-1938 0.05 OrthoFinder output from all 47 species
Cba_g12399 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22020 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25283 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g46210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07098 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g12101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13146 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g18975 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25262 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_5858185g0010 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
Msp_g07021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14847 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g17377 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g40766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06420 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g61524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33573 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009761 No alias not classified & original description: CDS=1-2874 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011812 OTP84 not classified & original description: CDS=1-1944 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017880 No alias not classified & original description: CDS=1-1959 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020627 No alias not classified & original description: CDS=1-2037 0.03 OrthoFinder output from all 47 species
Sam_g17656 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo103247 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Smo76226 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo97139 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39240 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55537 DOT4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e008200_P001 Zm00001e008200 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 559 679
No external refs found!