Smo118138 (PAT2)

Aliases : PAT2

Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-3 Golgi to vacuole cargo adaptor complex.AP3B large beta subunit

Gene families : OG0006164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006164_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo118138
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
AT3G55480	PAT2	protein affected trafﬁcking 2	0.03	OrthoFinder output from all 47 species
Adi_g077141	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.03	OrthoFinder output from all 47 species
Aob_g12108	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.02	OrthoFinder output from all 47 species
Ceric.28G061600.1	PAT2, Ceric.28G061600	large subunit beta of AP-3 Golgi to vacuole cargo...	0.03	OrthoFinder output from all 47 species
Dcu_g19428	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.08	OrthoFinder output from all 47 species
GSVIVT01016531001	PAT2	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.04	OrthoFinder output from all 47 species
Gb_19472	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex	0.03	OrthoFinder output from all 47 species
LOC_Os01g74180.1	PAT2, LOC_Os01g74180	large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex	0.03	OrthoFinder output from all 47 species
Mp6g07170.1	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex	0.03	OrthoFinder output from all 47 species
Ore_g20296	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.03	OrthoFinder output from all 47 species
Sam_g10545	No alias	large subunit beta of AP-3 Golgi to vacuole cargo...	0.02	OrthoFinder output from all 47 species
Solyc06g043030.4.1	PAT2, Solyc06g043030	large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex	0.05	OrthoFinder output from all 47 species
Zm00001e029209_P001	PAT2, Zm00001e029209	large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002553	Clathrin/coatomer_adapt-like_N	22	576

External Links

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Smo118138 (PAT2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation