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  5. Smo113300

Smo113300 (FUM1)


Aliases : FUM1

Description : Cellular respiration.tricarboxylic acid cycle.fumarase


Gene families : OG0004044 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004044_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo113300
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AT2G47510 FUM1 fumarase 1 0.06 OrthoFinder output from all 47 species
Adi_g022045 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07981 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02018 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07380 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02907 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os03g21950.1 FUM1, LOC_Os03g21950 fumarase 0.03 OrthoFinder output from all 47 species
Lfl_g01697 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65520 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c23_19500V3.1 FUM1, Pp3c23_19500 FUMARASE 2 0.01 OrthoFinder output from all 47 species
Sam_g35382 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g075450.3.1 FUM1, Solyc09g075450 fumarase 0.03 OrthoFinder output from all 47 species
Spa_g06276 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12353 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e001600_P001 FUM1, Zm00001e001600 fumarase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018951 Fumarase_C_C 428 480
No external refs found!