Smo110395 (CHR01, CHR1, CHA1,...)

Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1

Description : Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DDM1 chromatin remodeling factor

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo110395

Target	Alias	Description	ECC score	Gene Family Method
Aop_g05226	CHR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020825.19	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
MA_102992g0010	CHR17	Probable chromatin-remodeling complex ATPase chain...	0.03	OrthoFinder output from all 47 species
Nbi_g02499	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g04407	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024260	CHR01, CHR1,...	not classified & original description: CDS=245-1573	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	451	561

External Links

No external refs found!