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Smo107914


Description : DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica


Gene families : OG0004454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo107914
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Ceric.09G038600.1 Ceric.09G038600 not classified & original description: pacid=50586912... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.35 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Cre10.g420900 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os12g29660.1 LOC_Os12g29660 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Nbi_g08354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010143_P002 Zm00001e010143 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 349 455
No external refs found!