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  5. Smo102790

Smo102790 (ATCOL4, COL4)


Aliases : ATCOL4, COL4

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo102790
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00204180 STO,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT1G06040 STO B-box zinc finger family protein 0.06 OrthoFinder output from all 47 species
Adi_g057497 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11974 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009705 No alias BBX class-IV transcription factor & original... 0.05 OrthoFinder output from all 47 species
LOC_Os01g10580.1 LZF1, STH3,... transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
LOC_Os02g39360.1 STH, LOC_Os02g39360 transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
Mp5g05940.1 No alias transcription factor (BBX-DBB) 0.05 OrthoFinder output from all 47 species
Zm00001e007720_P001 STO, Zm00001e007720 transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 45 90
No external refs found!