Heatmap: Cluster_50 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
0.09 0.11 0.27 0.1 0.13 0.26 0.0 -0.14 0.1 -0.06 -0.17 -0.13 -0.24 -0.34 -0.54 -0.43 -0.03 -0.41 0.21 0.16 1.33 -0.86 -0.13 -0.27 0.25 -0.66 -0.05 -0.09 -0.05 -0.07 -0.08 0.09
Smo102790 (COL4)
-0.6 -0.72 -0.78 -1.0 -1.3 -2.02 -4.77 -5.89 -7.02 -6.48 -5.18 -4.58 -0.53 -1.68 -3.42 1.0 1.99 1.84 2.32 -6.23 -4.25 - 2.28 2.65 -3.63 -4.11 -3.49 -3.64 -0.99 -0.84 -1.49 -1.92
Smo102902 (COL2)
-1.14 -1.17 -1.08 -1.65 -2.59 -2.77 -5.84 - -5.75 -6.42 -7.96 -5.14 -0.55 -1.68 -3.25 0.71 1.78 1.57 2.07 1.22 -0.49 -2.75 1.97 2.45 1.19 -3.81 -3.96 -2.83 -1.24 -0.99 -1.64 -2.21
Smo105078 (CP12)
-1.77 -1.28 -0.93 -0.62 0.27 0.38 0.39 -0.83 -1.26 -1.49 -1.53 -1.98 -2.48 -3.11 -4.44 -2.24 0.95 1.24 -0.17 -1.16 1.75 -1.73 0.77 -0.04 0.55 -0.62 1.42 1.37 0.48 0.39 -0.39 -0.02
-2.01 -1.39 -0.41 0.3 0.51 0.49 0.35 -0.12 0.0 -0.52 -0.9 -1.67 0.26 -0.78 -4.11 0.7 0.77 -0.61 0.59 -1.0 0.19 -7.31 0.84 0.56 0.47 -0.57 0.41 0.55 0.57 0.84 -0.59 -0.32
-0.6 -0.03 0.09 0.31 0.34 0.35 0.15 -0.05 -0.36 -0.12 -0.23 -0.56 -0.08 -1.13 -2.08 0.56 0.23 0.61 0.88 -1.94 0.29 -3.82 0.48 0.28 1.1 -0.66 -0.61 -0.68 0.29 0.27 -0.15 0.02
-0.73 -0.57 -0.34 -0.0 0.31 0.41 0.43 -0.03 0.13 -0.15 -0.29 -0.54 1.12 -0.28 -0.47 0.64 0.05 -0.93 -1.64 0.08 -0.05 0.91 0.72 0.51 0.25 -0.56 0.0 0.36 -0.47 -0.29 -1.42 -1.59
Smo136737 (PWD)
-0.73 -0.6 -0.75 -0.02 0.28 0.28 0.35 0.05 -0.31 -0.51 -0.39 -0.53 -3.01 -0.75 -1.75 0.77 -1.14 -2.03 -0.24 -1.7 1.23 -4.16 0.89 1.73 0.49 0.0 0.68 1.16 -0.43 0.04 -0.64 -0.65
Smo149205 (APL2)
-0.0 0.74 -0.09 -0.4 -0.6 -1.15 -2.0 -3.0 -3.09 -2.97 -2.68 -2.34 -1.43 -0.75 -0.56 -0.54 1.3 0.21 1.82 -2.83 -1.88 -8.21 1.53 2.11 2.02 -2.17 -0.52 -0.59 -1.18 -0.66 -0.11 -0.27
-1.11 -0.2 0.1 -0.1 -0.16 -0.01 -0.01 -0.67 -0.71 -1.16 -0.94 -1.31 -0.92 -1.08 -3.32 0.41 -0.72 -0.99 0.7 0.01 2.12 -3.66 1.43 1.72 0.96 -1.26 -0.16 0.18 -0.79 -0.43 -1.49 -1.03
-1.95 -1.24 -0.61 -0.18 -0.06 0.97 0.5 0.35 0.14 -0.5 -0.53 -1.55 -0.01 -0.57 -1.88 0.26 1.21 -0.08 0.57 -3.73 -2.14 -5.84 0.85 0.62 -0.51 0.45 -0.0 0.45 0.89 0.69 0.02 -0.2
Smo16699 (PRR7)
-3.1 -2.32 -2.33 -0.21 1.09 0.61 -1.95 -4.08 -6.89 - -7.66 -5.99 -0.77 -1.97 -2.39 0.65 2.37 0.84 1.93 -6.44 -3.84 -5.94 2.3 1.91 -2.55 -3.64 0.67 0.19 -1.92 -2.33 -1.15 -0.8
-0.45 -0.21 -0.2 -0.26 0.03 0.3 -0.29 -0.35 -0.57 -0.42 -0.53 -0.79 0.5 -1.1 -1.27 0.23 0.09 0.23 0.26 0.71 1.59 -0.1 0.71 0.57 1.11 -1.07 -0.59 -0.43 -0.37 -0.01 -1.53 -1.39
Smo173619 (CPISCA)
-0.54 -0.19 -0.03 0.24 0.44 0.61 0.27 0.13 -0.32 -0.41 -0.71 -0.8 -0.71 -0.92 -1.57 -0.33 0.23 0.18 0.11 -0.39 1.49 -1.45 0.21 -0.03 0.45 -0.57 0.36 0.56 -0.03 0.03 -0.14 -0.14
Smo177278 (PAP15)
-1.77 -0.41 -0.09 -0.17 0.35 -0.03 -0.48 -0.95 -0.81 -0.65 -1.35 -1.61 -4.37 -6.5 -3.31 -4.11 1.46 1.31 1.89 -4.24 -2.3 -1.27 1.73 1.35 0.98 -0.87 0.44 0.04 -0.01 -0.07 -1.27 -0.41
Smo230142 (ADF6)
-0.78 -1.11 -0.48 -0.96 -0.82 -0.3 -0.54 -0.64 -0.54 -0.81 -0.64 -0.9 -0.97 0.12 -0.3 -0.24 -0.37 0.88 -0.12 -0.37 0.97 -1.33 1.26 1.33 0.87 -1.39 0.29 0.58 0.02 0.26 0.42 0.34
Smo270984 (CAM3)
-0.57 -0.24 0.06 0.21 0.65 0.38 -0.41 -1.0 -0.91 -0.84 -0.99 -0.95 -0.81 -1.94 -2.35 -0.45 0.87 -0.61 1.08 -2.14 0.31 -1.9 1.14 0.98 1.5 -0.27 0.47 1.08 -0.28 -0.08 -1.2 -1.17
Smo271925 (TT7)
-1.03 0.9 0.25 0.91 -1.45 0.81 -2.35 -4.03 -3.47 -3.08 -31.16 -5.06 - - - -3.73 2.05 -3.58 2.2 -1.94 -1.8 -4.15 1.27 0.71 1.79 -1.08 0.71 0.98 -0.11 0.27 -1.39 -1.31
-0.58 -0.12 -0.15 -0.2 0.18 0.25 0.24 -0.32 -0.37 -0.82 -1.05 -1.04 0.13 0.05 -1.78 -0.2 0.5 0.6 0.15 -1.6 0.57 -1.46 0.07 0.26 0.92 -0.94 0.64 0.75 0.06 0.08 0.28 0.39
-1.65 -1.8 -0.69 -0.34 -0.22 0.01 -1.36 -1.25 -0.65 -1.14 -3.05 -2.35 -0.8 -2.8 -3.52 0.68 0.62 -5.12 1.17 - -2.77 - 1.52 1.91 1.94 0.66 1.09 1.32 -0.01 -0.16 -0.87 -1.23
Smo38684 (PRR7)
-1.08 1.11 0.87 0.83 0.5 -0.52 -1.72 -3.31 -4.98 -5.65 -7.63 -5.29 0.1 -1.7 -1.58 0.7 1.65 1.29 1.19 -7.89 -7.65 - 1.72 1.63 -5.38 -4.25 0.02 -0.19 -0.11 -0.25 0.09 -0.4
-0.59 -0.07 -0.36 -0.78 -0.32 -0.88 -0.23 -1.33 -0.57 -1.66 -0.85 -1.18 0.17 -1.92 -6.52 0.53 0.21 1.67 0.2 -1.04 1.22 -5.25 1.66 1.55 -0.48 -2.41 -1.28 -1.57 0.26 0.3 0.53 0.73
- - - - - - - - - - - - 0.41 - - 1.34 2.26 1.76 1.93 - - - 2.4 1.94 -1.39 - - - 1.24 0.81 0.31 0.36
-1.71 -1.67 - - - 0.13 -0.68 -1.82 - - -1.68 -1.75 0.21 0.39 -0.82 - - - - - 2.36 - 0.33 3.12 1.3 - 0.9 2.3 -1.5 - -0.55 -1.62
-1.15 -1.03 -0.84 0.12 0.76 0.98 0.54 0.5 -0.25 -0.48 -0.74 -1.29 0.17 -1.3 -1.97 0.51 0.6 0.34 0.66 -1.73 0.61 -1.92 0.55 0.35 1.47 -1.82 -0.42 -0.29 -0.0 0.04 -0.75 -0.53
-0.58 -0.22 0.03 0.25 -0.1 -0.41 0.06 0.17 0.19 0.11 -0.09 -0.28 -1.67 -1.7 -5.76 -0.44 -0.65 -0.91 -0.07 0.16 1.71 -5.76 1.51 1.17 0.87 -0.48 -0.44 -0.8 -0.16 -0.39 -0.29 0.1
- -3.01 - -2.37 0.24 -0.79 - -1.03 0.5 -3.26 -3.15 - -1.77 -2.66 -3.55 -0.71 0.45 -0.07 0.13 - 1.44 - 2.07 1.66 1.43 0.23 0.85 1.96 -0.34 0.29 -0.33 -0.38
-1.12 -1.25 -1.38 -1.34 -1.66 -1.05 -1.17 -0.75 -1.54 -1.53 -1.12 -1.23 -5.29 -3.61 -5.49 -3.47 1.2 1.17 0.13 -0.99 0.36 -4.04 0.41 -0.44 0.33 1.04 1.89 1.94 1.12 0.98 0.29 -0.14
Smo411196 (ELF3)
-5.52 -4.33 -3.31 -1.49 1.09 1.37 -0.08 -2.44 -4.6 -4.45 -5.37 -5.91 -3.53 -2.32 -1.88 -1.09 2.34 0.4 0.89 -2.85 -0.29 -3.91 2.51 1.06 0.58 -3.88 1.36 1.5 -2.32 -2.52 -4.02 -3.84
-0.51 -0.35 -0.81 -0.53 -0.35 -0.52 -0.71 -0.4 -0.15 -0.7 -0.65 -0.62 -1.43 0.32 -0.74 0.08 -0.71 0.16 0.28 -0.75 0.9 -1.72 1.52 1.79 1.79 0.1 -0.29 -0.28 -0.84 -0.79 -1.29 -0.83
-1.29 -1.66 -1.28 -0.22 -0.7 -0.11 0.01 -0.33 -0.24 -0.78 -1.04 -1.35 -0.1 -0.49 -0.98 0.03 0.99 0.27 0.7 - -3.98 -4.84 0.62 0.59 -1.63 0.13 1.17 1.48 0.93 1.12 0.8 -0.05
-0.56 -0.64 -0.55 -0.49 -0.26 0.03 0.01 0.26 -0.26 -0.78 -0.95 -1.02 -1.45 -2.33 -1.24 -0.8 0.62 0.5 0.3 -1.22 -1.33 -2.97 0.16 0.61 1.01 -0.08 1.53 1.64 0.33 0.75 -0.36 -0.37
-2.4 -0.91 -0.84 0.04 0.63 0.96 0.75 -0.03 -0.39 -0.52 -0.77 -1.27 -1.68 -1.4 0.12 -0.91 1.57 0.5 -0.28 0.37 -5.36 -3.53 0.99 -0.08 -1.93 -1.73 1.4 1.26 0.16 0.17 -0.63 -0.46
-1.99 -1.01 0.1 -0.35 -0.27 -0.01 0.4 -0.14 0.2 -0.15 -1.54 -2.03 0.06 -2.48 -3.91 -1.95 0.22 -0.1 1.49 -0.64 -0.75 - 0.31 0.42 1.53 0.88 0.91 0.78 -0.32 -0.42 -0.03 0.67
-2.78 -1.57 -1.62 -0.2 0.46 0.77 0.8 0.48 0.23 -0.44 -0.94 -1.77 0.32 -3.41 -4.01 -0.84 -0.16 -0.06 1.41 -5.52 -0.26 - 0.36 0.38 0.93 0.34 0.8 0.48 -0.04 -0.09 0.47 0.91
-0.97 0.27 -0.16 0.66 0.74 0.64 0.17 -0.93 0.49 -0.2 -1.3 -0.64 -0.46 -0.93 1.18 -0.41 1.05 1.36 -0.4 0.28 1.39 -0.09 -0.51 -1.31 - -2.07 -0.41 -0.32 -1.5 -0.61 -1.04 -0.35
Smo428537 (SD2-5)
-0.28 -0.22 -0.24 -0.25 -0.19 -0.03 0.07 0.02 0.01 0.05 -0.25 -0.11 0.34 -0.83 -0.57 0.26 0.01 -0.18 0.69 -0.52 0.13 -2.82 0.35 0.43 0.87 -0.47 -0.72 -0.69 0.2 0.09 0.54 0.78
-0.17 0.15 0.02 -0.15 -0.26 -0.24 -0.42 -0.88 -1.23 -1.35 -1.15 -1.16 0.41 -0.13 -0.95 0.51 0.39 0.67 0.59 0.02 -0.05 -2.24 1.06 0.8 0.35 -0.76 -0.17 -0.23 0.3 0.44 0.51 0.23
Smo438615 (OMT1)
-1.42 -0.62 -0.04 0.02 -0.01 -0.11 -0.0 -0.55 -0.57 -0.8 -0.84 -1.17 0.61 0.32 -4.7 0.64 -0.38 -0.53 0.47 -1.87 0.94 -5.83 1.46 1.5 1.22 -0.07 -0.06 0.22 -0.32 -0.2 -1.16 -0.7
-1.18 -1.27 -0.72 -0.38 -0.03 0.64 0.49 0.09 0.18 -0.16 -0.81 -0.88 -0.32 -0.08 0.39 -0.44 0.29 0.17 -0.24 0.54 0.76 0.56 0.32 0.7 0.11 -1.47 -0.21 0.16 0.29 0.46 -0.86 -0.82
0.11 1.07 1.02 0.7 1.06 0.41 -0.79 -1.29 -1.84 -2.11 -2.99 -2.01 -6.12 -4.7 -5.5 -5.66 0.84 -0.02 1.96 0.7 -0.87 - 1.52 0.04 0.99 -0.3 0.51 0.81 -1.23 -1.31 -2.89 -2.98
Smo445456 (roxy19)
-1.72 -0.75 -0.28 -0.25 -0.73 -0.24 -0.9 -1.59 -2.47 -2.76 -2.46 -2.17 -0.88 -0.83 -2.07 0.27 1.17 1.37 1.21 -0.49 2.25 -3.13 1.12 0.58 1.4 -1.73 -0.62 -0.99 -0.02 -0.26 -0.65 -0.18
-0.61 -0.33 0.28 0.29 0.55 0.4 0.31 -0.3 -0.7 -0.97 -1.02 -1.65 -0.87 -0.79 -2.1 0.2 0.92 0.32 0.62 -1.62 0.19 -2.6 1.41 0.99 0.17 -0.48 -0.34 -0.02 0.23 0.21 0.09 -0.25
-4.23 0.25 -2.12 -0.25 0.35 2.09 0.63 0.05 - -1.0 - - - - - - 1.11 -2.68 1.42 - 0.63 - 1.32 -0.1 1.24 -0.69 2.05 1.75 -1.73 - -1.71 -
- - - - - - - - - - - - 0.64 - - 1.22 2.19 1.35 2.01 -1.71 - - 2.3 1.57 -2.37 - - - 1.1 1.03 0.79 1.4
-1.6 -1.22 -0.47 -0.12 0.24 0.75 0.16 -0.21 -0.94 -1.32 -2.01 -1.9 -1.9 -1.08 -4.04 -1.01 0.73 0.88 -0.01 -2.79 0.8 -2.72 0.1 -0.5 1.58 -0.95 1.35 1.52 0.2 0.11 0.39 0.3
-0.26 -0.44 -0.33 -0.4 -0.1 0.06 -0.22 -0.19 -0.26 -0.47 -0.27 -0.49 -0.72 -0.59 -0.18 -0.51 0.62 0.91 0.08 -0.93 0.21 -1.31 -0.1 -0.21 0.76 0.07 0.7 0.57 0.29 0.32 0.35 0.34
Smo69431 (WRKY57)
-0.6 -0.33 -0.57 -1.05 -0.51 -0.36 -1.2 -0.76 -0.51 -0.49 -0.59 -0.87 -1.57 -0.83 -2.87 -0.13 -0.81 0.66 1.26 -0.22 1.13 -0.35 0.64 1.54 1.48 -0.33 0.04 -0.32 0.04 0.26 -0.07 -0.17
- - - - - - - - - - - - 0.28 - - 1.03 1.91 1.88 1.57 -0.39 0.2 -1.44 2.01 2.05 1.56 - - - 0.54 0.33 0.28 -0.0
Smo73284 (TUB6)
-0.7 0.03 -0.33 0.2 1.0 0.95 0.04 -0.29 -1.1 -0.62 -1.42 -1.75 -0.47 -1.91 -1.83 0.05 0.32 0.07 0.72 -0.5 -0.2 -2.75 0.85 0.66 1.33 -0.34 0.86 1.19 -0.74 -0.85 -1.03 -1.14
-0.46 -0.01 0.0 0.25 0.34 0.09 0.06 0.07 -0.23 0.02 -0.28 -0.32 -0.49 -1.68 -0.07 -0.52 -0.37 -0.69 -0.19 -0.88 1.08 -2.07 1.1 1.37 1.11 0.04 -0.03 -0.09 -0.42 -0.36 -1.1 -0.93
-1.32 -0.74 -0.82 -0.78 -0.48 -0.34 -0.82 -1.33 -1.05 -0.99 -1.2 -1.45 -0.45 -0.05 -2.85 0.28 0.65 0.98 0.29 -0.66 1.47 -3.12 1.84 1.53 0.99 -0.7 -0.56 0.15 0.22 0.45 -1.22 -1.15
Smo88436 (NF-YB11)
-0.96 -0.68 -0.2 0.2 0.43 0.75 0.38 -0.14 -0.58 -0.68 -0.87 -0.96 0.04 -0.54 -0.55 0.81 -0.38 -0.32 -0.08 0.29 0.27 -0.02 1.0 1.05 0.34 -1.38 0.14 0.51 -0.3 -0.13 -0.81 -0.61
-0.36 -0.21 -0.03 0.03 0.27 0.66 0.52 0.26 -0.15 -0.24 -0.41 -0.4 -1.56 -0.87 -1.51 -0.89 0.4 -0.17 -0.21 -0.24 1.91 -2.83 -0.07 -0.35 0.95 -0.97 0.12 0.12 0.29 0.27 -0.31 -0.97
-1.22 -0.76 -0.81 -0.41 0.07 0.51 0.35 0.5 0.02 -0.58 -1.04 -1.17 -1.05 -0.25 -1.52 -0.05 -0.1 0.7 0.71 -1.46 1.88 -0.66 0.16 -0.15 0.99 -1.35 0.23 -0.15 0.11 -0.04 -0.18 -0.08
-1.89 -1.48 -0.71 0.28 0.85 0.92 0.92 0.45 -0.1 -0.57 -1.01 -1.81 0.21 0.12 -1.84 0.66 0.11 -0.84 -0.1 -3.05 0.76 -3.72 1.31 1.02 0.44 -0.73 -0.38 -0.27 -0.13 -0.33 -0.03 -0.2
-0.77 -0.2 -0.29 -0.57 -0.65 -0.59 -0.54 -1.13 -0.87 -1.12 -0.96 -1.19 -0.28 -0.17 -4.2 0.93 -0.66 -0.12 0.45 -1.8 0.99 -5.24 2.03 2.06 1.77 -2.05 -0.91 -0.7 -0.4 -0.1 -1.28 -0.68
-0.12 -0.09 -0.25 0.13 0.22 0.29 0.05 0.06 0.55 -0.38 -0.26 -0.51 -0.18 -1.96 -1.55 0.21 0.32 0.86 0.66 -0.87 -0.59 -1.09 0.14 0.18 1.32 -0.42 0.02 -0.7 0.33 0.36 -0.55 -0.56
-0.71 -0.92 -0.51 -0.13 -0.1 -0.01 -0.16 0.08 0.02 -0.35 -0.52 -0.78 -0.03 -0.3 -1.07 -0.15 0.36 0.08 0.25 -1.46 -0.02 -4.8 0.39 0.14 0.14 0.56 1.14 1.04 0.56 0.64 0.05 -0.15

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.