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  5. LOC_Os12g41250.1

LOC_Os12g41250.1 (MCCA, LOC_Os12g41250)


Aliases : MCCA, LOC_Os12g41250

Description : subunit alpha of methylcrotonoyl-CoA carboxylase complex


Gene families : OG0001087 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g41250.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AT1G03090 MCCA methylcrotonyl-CoA carboxylase alpha chain,... 0.08 OrthoFinder output from all 47 species
Aev_g18383 CAC2 EC_6.4 ligase forming carbon-carbon bond & original... 0.02 OrthoFinder output from all 47 species
Als_g09097 MCCA EC_6.4 ligase forming carbon-carbon bond & original... 0.02 OrthoFinder output from all 47 species
Ceric.23G000300.1 MCCA, Ceric.23G000300 EC_6.4 ligase forming carbon-carbon bond & original... 0.03 OrthoFinder output from all 47 species
Cre06.g278098 MCCA Amino acid metabolism.degradation.branched-chain amino... 0.11 OrthoFinder output from all 47 species
GSVIVT01001194001 MCCA Amino acid metabolism.degradation.branched-chain amino... 0.04 OrthoFinder output from all 47 species
Mp8g15290.1 MCCA subunit alpha of methylcrotonoyl-CoA carboxylase complex 0.07 OrthoFinder output from all 47 species
Msp_g06625 CAC2 EC_6.4 ligase forming carbon-carbon bond & original... 0.03 OrthoFinder output from all 47 species
Msp_g07697 MCCA EC_6.4 ligase forming carbon-carbon bond & original... 0.03 OrthoFinder output from all 47 species
Pir_g40620 MCCA EC_6.4 ligase forming carbon-carbon bond & original... 0.03 OrthoFinder output from all 47 species
Ppi_g44022 CAC2 EC_6.4 ligase forming carbon-carbon bond & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0166.g024149 MCCA EC_6.4 ligase forming carbon-carbon bond & original... 0.03 OrthoFinder output from all 47 species
Smo411767 MCCA Amino acid metabolism.degradation.branched-chain amino... 0.04 OrthoFinder output from all 47 species
Smo77392 MCCA Amino acid metabolism.degradation.branched-chain amino... 0.05 OrthoFinder output from all 47 species
Solyc09g065540.3.1 MCCA, Solyc09g065540 subunit alpha of methylcrotonoyl-CoA carboxylase complex 0.06 OrthoFinder output from all 47 species
Spa_g11171 MCCA EC_6.4 ligase forming carbon-carbon bond & original... 0.05 OrthoFinder output from all 47 species
Zm00001e003196_P001 MCCA, Zm00001e003196 subunit alpha of methylcrotonoyl-CoA carboxylase complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003997 acyl-CoA oxidase activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005482 Biotin_COase_C 374 482
IPR005481 BC-like_N 39 147
IPR005479 CbamoylP_synth_lsu-like_ATP-bd 152 360
IPR000089 Biotin_lipoyl 666 730
No external refs found!