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  5. LOC_Os12g39210.1

LOC_Os12g39210.1 (CYCA3;4, LOC_Os12g39210)


Aliases : CYCA3;4, LOC_Os12g39210

Description : cyclin (CYCA)


Gene families : OG0001097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g39210.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 CYCA3;1,... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.15 OrthoFinder output from all 47 species
AMTR_s00068p00198800 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.18 OrthoFinder output from all 47 species
AT1G44110 CYCA1;1 Cyclin A1;1 0.19 OrthoFinder output from all 47 species
AT1G47210 CYCA3;2 cyclin-dependent protein kinase 3;2 0.02 OrthoFinder output from all 47 species
AT1G80370 CYCA2;4 Cyclin A2;4 0.1 OrthoFinder output from all 47 species
AT5G43080 CYCA3;1 Cyclin A3;1 0.13 OrthoFinder output from all 47 species
Adi_g023459 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.04 OrthoFinder output from all 47 species
Adi_g032026 CYCA1;1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g039314 CYCA2;1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g16144 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Ala_g21059 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
Ala_g23638 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Ala_g25625 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
Als_g03751 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Als_g14283 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Aob_g29454 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Aop_g01772 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
Aop_g04287 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Aop_g19060 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.11 OrthoFinder output from all 47 species
Aspi01Gene15105.t1 CYCA1;1, Aspi01Gene15105 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Aspi01Gene18499.t1 CYCA1;1, Aspi01Gene18499 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Azfi_s0003.g008079 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g010440 CYCA1;1 not classified & original description: CDS=585-2150 0.1 OrthoFinder output from all 47 species
Azfi_s0022.g016140 CYCA1;1 not classified & original description: CDS=307-1776 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031411 CYCA1;1 not classified & original description: CDS=319-1644 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048725 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Cba_g05904 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ceric.08G046900.1 CYCA1;1, Ceric.08G046900 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Ceric.26G030100.1 CYCA1;1, Ceric.26G030100 regulatory protein *(TAM) involved in metaphase to... 0.15 OrthoFinder output from all 47 species
Ceric.30G011000.1 CYCA1;1, Ceric.30G011000 regulatory protein *(TAM) involved in metaphase to... 0.12 OrthoFinder output from all 47 species
Ceric.33G050700.1 CYCA1;1, Ceric.33G050700 regulatory protein *(TAM) involved in metaphase to... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.67 CYCA1;1 Cyclin-A2-1 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Cre03.g207900 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.05 OrthoFinder output from all 47 species
Dac_g04219 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Dac_g11514 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Dac_g13212 CYCA1;1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g04793 CYC3B, CYCA2;2, CYC2BAT regulatory protein *(TAM) involved in metaphase to... 0.13 OrthoFinder output from all 47 species
Dcu_g12296 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Dcu_g31687 CYCA1;1 regulatory protein *(CYCA) of cell cycle & original... 0.12 OrthoFinder output from all 47 species
Dde_g11191 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
GSVIVT01008823001 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.17 OrthoFinder output from all 47 species
GSVIVT01009399001 CYCA3;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.13 OrthoFinder output from all 47 species
GSVIVT01035718001 CYC3B, CYCA2;2, CYC2BAT Cell cycle.regulation.cyclins.CYCA-type cyclin 0.12 OrthoFinder output from all 47 species
Gb_03779 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.08 OrthoFinder output from all 47 species
Gb_07594 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.11 OrthoFinder output from all 47 species
Gb_10619 CYCA1;1 cyclin (CYCA) 0.12 OrthoFinder output from all 47 species
Len_g01814 CYCA1;1 regulatory protein *(CYCA) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Len_g08312 CYC3B, CYCA2;2, CYC2BAT regulatory protein *(CYCA) of cell cycle & original... 0.07 OrthoFinder output from all 47 species
Len_g21318 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Lfl_g27348 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Lfl_g27435 CYCA1;1 regulatory protein *(CYCA) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Lfl_g39997 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
MA_103138g0010 CYCA1;1 cyclin (CYCA) 0.08 OrthoFinder output from all 47 species
MA_28323g0010 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.11 OrthoFinder output from all 47 species
MA_6619g0010 CYCA1;1 cyclin (CYCA) 0.11 OrthoFinder output from all 47 species
MA_88982g0010 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.08 OrthoFinder output from all 47 species
Mp2g25500.1 CYCA1;1 cyclin (CYCA) 0.11 OrthoFinder output from all 47 species
Msp_g10135 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.14 OrthoFinder output from all 47 species
Msp_g12560 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.13 OrthoFinder output from all 47 species
Msp_g31552 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Nbi_g06697 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.13 OrthoFinder output from all 47 species
Nbi_g16546 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Nbi_g24493 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.14 OrthoFinder output from all 47 species
Ppi_g05200 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
Ppi_g07555 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Ppi_g31211 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010609 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Sam_g12488 No alias regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Sam_g12489 No alias regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Sam_g28585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51377 No alias regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Smo442428 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 OrthoFinder output from all 47 species
Smo97411 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.02 OrthoFinder output from all 47 species
Solyc03g120440.3.1 CYCA2;4, Solyc03g120440 cyclin (CYCA) 0.04 OrthoFinder output from all 47 species
Solyc04g078310.3.1 CYCA3;1, Solyc04g078310 cyclin (CYCA) 0.11 OrthoFinder output from all 47 species
Solyc06g065680.3.1 CYCA2;4, Solyc06g065680 cyclin (CYCA) 0.11 OrthoFinder output from all 47 species
Solyc11g005090.2.1 CYCA1;1, Solyc11g005090 cyclin (CYCA) 0.1 OrthoFinder output from all 47 species
Solyc12g088470.3.1 CYCA3;1, Solyc12g088470 cyclin (CYCA) 0.07 OrthoFinder output from all 47 species
Solyc12g088500.2.1 CYCA3;1, Solyc12g088500 cyclin (CYCA) 0.02 OrthoFinder output from all 47 species
Solyc12g088520.2.1 CYCA3;1, Solyc12g088520 cyclin (CYCA) 0.06 OrthoFinder output from all 47 species
Spa_g11240 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.1 OrthoFinder output from all 47 species
Spa_g11241 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.1 OrthoFinder output from all 47 species
Spa_g11267 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.1 OrthoFinder output from all 47 species
Spa_g30899 CYCA1;1 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g03369 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.1 OrthoFinder output from all 47 species
Tin_g30126 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
Zm00001e003049_P002 CYCA3;1, Zm00001e003049 cyclin (CYCA) 0.09 OrthoFinder output from all 47 species
Zm00001e005138_P001 CYCA3;1, Zm00001e005138 cyclin (CYCA) 0.12 OrthoFinder output from all 47 species
Zm00001e013250_P002 CYC3B, CYCA2;2,... cyclin (CYCA) 0.07 OrthoFinder output from all 47 species
Zm00001e017335_P001 CYCA1;1, Zm00001e017335 cyclin (CYCA) 0.13 OrthoFinder output from all 47 species
Zm00001e017993_P001 CYCA3;1, Zm00001e017993 cyclin (CYCA) 0.07 OrthoFinder output from all 47 species
Zm00001e026125_P002 CYCA1;1, Zm00001e026125 cyclin (CYCA) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 249 371
IPR006671 Cyclin_N 118 246
No external refs found!