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  5. LOC_Os12g37710.1

LOC_Os12g37710.1 (LOC_Os12g37710)


Aliases : LOC_Os12g37710

Description : PPD1 protein involved in PS-I assembly


Gene families : OG0006534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g37710.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00103160 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
AT4G15510 No alias Photosystem II reaction center PsbP family protein 0.09 OrthoFinder output from all 47 species
Adi_g013844 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
Als_g00378 No alias protein involved in PS-I assembly *(PPD1) & original... 0.06 OrthoFinder output from all 47 species
Aop_g06568 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g71868 No alias protein involved in PS-I assembly *(PPD1) & original... 0.01 OrthoFinder output from all 47 species
Ceric.27G030500.1 Ceric.27G030500 protein involved in PS-I assembly *(PPD1) & original... 0.07 OrthoFinder output from all 47 species
Cre08.g362900 No alias Photosynthesis.photophosphorylation.photosystem... 0.08 OrthoFinder output from all 47 species
Dac_g08500 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g37634 No alias protein involved in PS-I assembly *(PPD1) & original... 0.1 OrthoFinder output from all 47 species
Ehy_g18351 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01031268001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Gb_02226 No alias PPD1 protein involved in PS-I assembly 0.02 OrthoFinder output from all 47 species
Lfl_g08661 No alias protein involved in PS-I assembly *(PPD1) & original... 0.06 OrthoFinder output from all 47 species
MA_81231g0010 No alias PPD1 protein involved in PS-I assembly 0.06 OrthoFinder output from all 47 species
Mp1g27590.1 No alias PPD1 protein involved in PS-I assembly 0.14 OrthoFinder output from all 47 species
Nbi_g19709 No alias protein involved in PS-I assembly *(PPD1) & original... 0.06 OrthoFinder output from all 47 species
Pir_g10011 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g08071 No alias protein involved in PS-I assembly *(PPD1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001177 No alias protein involved in PS-I assembly *(PPD1) & original... 0.07 OrthoFinder output from all 47 species
Sam_g20161 No alias protein involved in PS-I assembly *(PPD1) & original... 0.02 OrthoFinder output from all 47 species
Solyc01g106090.3.1 Solyc01g106090 PPD1 protein involved in PS-I assembly 0.09 OrthoFinder output from all 47 species
Spa_g12584 No alias protein involved in PS-I assembly *(PPD1) & original... 0.12 OrthoFinder output from all 47 species
Tin_g00363 No alias protein involved in PS-I assembly *(PPD1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e002887_P002 Zm00001e002887 PPD1 protein involved in PS-I assembly 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006450 regulation of translational fidelity IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 69 245
No external refs found!