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  5. LOC_Os12g32970.1

LOC_Os12g32970.1 (LOC_Os12g32970)


Aliases : LOC_Os12g32970

Description : CASP-like protein 2B1 OS=Oryza sativa subsp. japonica (sp|q0in16|csple_orysj : 140.0)


Gene families : OG0000811 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000811_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g32970.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00153320 evm_27.TU.AmTr_v1... CASP-like protein 2B1 OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
AMTR_s00037p00155660 evm_27.TU.AmTr_v1... CASP-like protein 2D1 OS=Vitis vinifera 0.02 OrthoFinder output from all 47 species
AT1G17200 No alias Uncharacterised protein family (UPF0497) 0.02 OrthoFinder output from all 47 species
AT3G14380 No alias Uncharacterised protein family (UPF0497) 0.04 OrthoFinder output from all 47 species
AT5G54980 No alias Uncharacterised protein family (UPF0497) 0.02 OrthoFinder output from all 47 species
Aob_g17065 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20279 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18231.t1 Aspi01Gene18231 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33412.t1 Aspi01Gene33412 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g08984 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.23G007600.1 Ceric.23G007600 not classified & original description: pacid=50611535... 0.02 OrthoFinder output from all 47 species
Ceric.23G007900.1 Ceric.23G007900 not classified & original description: pacid=50611019... 0.03 OrthoFinder output from all 47 species
Dac_g09088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g44610.1 LOC_Os06g44610 CASP-like protein 2C1 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Lfl_g28436 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g15430.1 No alias CASP-like protein 2U1 OS=Marchantia polymorpha... 0.02 OrthoFinder output from all 47 species
Pir_g10078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo439258 No alias SCA7 domain-containing protein SELMODRAFT_439258... 0.02 OrthoFinder output from all 47 species
Solyc07g006855.2.1 Solyc07g006855 CASP-like protein 2C1 OS=Populus trichocarpa... 0.04 OrthoFinder output from all 47 species
Solyc11g012590.3.1 Solyc11g012590 CASP-like protein 2B1 OS=Ricinus communis... 0.03 OrthoFinder output from all 47 species
Solyc12g005070.2.1 Solyc12g005070 CASP-like protein 2D1 OS=Vitis vinifera... 0.02 OrthoFinder output from all 47 species
Tin_g44832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006702 CASP_dom 9 158
No external refs found!