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  5. LOC_Os12g31370.1

LOC_Os12g31370.1 (RAD51, ATRAD51, LOC_Os12g31370)


Aliases : RAD51, ATRAD51, LOC_Os12g31370

Description : component RAD51 of BRCC DNA-damage response complex


Gene families : OG0001716 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001716_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g31370.1
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Ala_g23150 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.05 OrthoFinder output from all 47 species
Als_g52823 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.02 OrthoFinder output from all 47 species
Aspi01Gene38719.t1 XRCC3, ATXRCC3,... component *(XRCC3) of RAD51c-XRCC3 accessory DSB repair... 0.03 OrthoFinder output from all 47 species
Cre06.g278151 XRCC3, ATXRCC3 DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g00622 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.07 OrthoFinder output from all 47 species
Dcu_g00814 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.04 OrthoFinder output from all 47 species
Gb_14443 RAD51, ATRAD51 DNA repair protein RAD51 homolog OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
Len_g09185 XRCC3, ATXRCC3 component *(XRCC3) of RAD51c-XRCC3 accessory DSB repair... 0.02 OrthoFinder output from all 47 species
Len_g11468 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.02 OrthoFinder output from all 47 species
MA_93267g0010 RAD51, ATRAD51 DNA repair protein RAD51 homolog 1 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Mp3g22920.1 RAD51, ATRAD51 component RAD51 of BRCC DNA-damage response complex 0.04 OrthoFinder output from all 47 species
Mp7g15410.1 XRCC3, ATXRCC3 component XRCC3 of RAD51c-XRCC3 accessory DSB repair heterodimer 0.08 OrthoFinder output from all 47 species
Msp_g01981 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.05 OrthoFinder output from all 47 species
Nbi_g04179 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.03 OrthoFinder output from all 47 species
Ppi_g02833 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000652 ARLIM15, DMC1, ATDMC1 not classified & original description: CDS=1-1248 0.04 OrthoFinder output from all 47 species
Solyc07g017540.4.1 RAD51, ATRAD51,... component RAD51 of BRCC DNA-damage response complex 0.05 OrthoFinder output from all 47 species
Spa_g38367 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.04 OrthoFinder output from all 47 species
Tin_g05894 RAD51, ATRAD51 component *(RAD51) of BRCC regulatory deubiquination... 0.05 OrthoFinder output from all 47 species
Zm00001e035339_P001 RAD51, ATRAD51,... component RAD51 of BRCC DNA-damage response complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013632 DNA_recomb/repair_Rad51_C 87 339
No external refs found!