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  5. LOC_Os12g31000.1

LOC_Os12g31000.1 (PUM7, APUM7, LOC_Os12g31000)


Aliases : PUM7, APUM7, LOC_Os12g31000

Description : Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana (sp|q9c9r6|pum7_arath : 374.0)


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g31000.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00167430 PUM7, APUM7,... Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Adi_g002912 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008180 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37289.t1 APUM12, PUM12,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63759.t1 APUM12, PUM12,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72050.t1 APUM12, PUM12,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13050 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002092 APUM12, PUM12 not classified & original description: CDS=226-2811 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 314 347
IPR001313 Pumilio_RNA-bd_rpt 282 310
IPR001313 Pumilio_RNA-bd_rpt 241 270
IPR001313 Pumilio_RNA-bd_rpt 392 409
No external refs found!