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  5. LOC_Os12g25200.1

LOC_Os12g25200.1 (ATCLC-B, CLC-B, LOC_Os12g25200)


Aliases : ATCLC-B, CLC-B, LOC_Os12g25200

Description : anion channel / anion:proton antiporter (CLC)


Gene families : OG0000501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g25200.1
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00233520 CLC-A, ATCLC-A,... Chloride channel protein CLC-a OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00013p00233550 ATCLC-B, CLC-B,... Solute transport.carrier-mediated transport.CLC anion... 0.06 OrthoFinder output from all 47 species
AT3G27170 ATCLC-B, CLC-B chloride channel B 0.06 OrthoFinder output from all 47 species
AT5G40890 CLC-A, ATCLC-A,... chloride channel A 0.04 OrthoFinder output from all 47 species
Aev_g05149 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.02 OrthoFinder output from all 47 species
Aev_g41935 ATCLC-B, CLC-B anion channel / anion:proton antiporter *(CLC) &... 0.03 OrthoFinder output from all 47 species
Aob_g14150 CLC-D, ATCLC-D anion channel / anion:proton antiporter *(CLC) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene39433.t1 Aspi01Gene39433 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0019.g015167 CLC-D, ATCLC-D anion channel / anion:proton antiporter *(CLC) &... 0.03 OrthoFinder output from all 47 species
Dac_g16210 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.05 OrthoFinder output from all 47 species
Len_g44129 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.02 OrthoFinder output from all 47 species
Ore_g04555 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.03 OrthoFinder output from all 47 species
Ore_g09753 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.02 OrthoFinder output from all 47 species
Ore_g12404 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.03 OrthoFinder output from all 47 species
Pir_g14943 ATCLC-C, CLC-C anion channel / anion:proton antiporter *(CLC) &... 0.02 OrthoFinder output from all 47 species
Smo442632 ATCLC-C, CLC-C Solute transport.carrier-mediated transport.CLC anion... 0.03 OrthoFinder output from all 47 species
Solyc02g068080.3.1 ATCLC-B, CLC-B,... anion channel / anion:proton antiporter (CLC) 0.08 OrthoFinder output from all 47 species
Zm00001e013966_P001 Zm00001e013966 anion channel / anion:proton antiporter (CLC) 0.04 OrthoFinder output from all 47 species
Zm00001e040930_P001 ATCLC-C, CLC-C,... anion channel / anion:proton antiporter (CLC) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005247 voltage-gated chloride channel activity IEA Interproscan
BP GO:0006821 chloride transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
CC GO:0019008 molybdopterin synthase complex IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR001807 Cl-channel_volt-gated 2 410
No external refs found!