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  5. LOC_Os12g25120.1

LOC_Os12g25120.1 (HTA2, LOC_Os12g25120)


Aliases : HTA2, LOC_Os12g25120

Description : histone (H2A)


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g25120.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 RAT5, HTA1,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
AMTR_s00057p00215390 HTA6,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
AMTR_s00058p00158560 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
AMTR_s00115p00128810 RAT5, HTA1,... Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.09 OrthoFinder output from all 47 species
AT1G51060 HTA10 histone H2A 10 0.03 OrthoFinder output from all 47 species
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.04 OrthoFinder output from all 47 species
AT3G20670 HTA13 histone H2A 13 0.03 OrthoFinder output from all 47 species
AT4G27230 HTA2 histone H2A 2 0.04 OrthoFinder output from all 47 species
AT5G27670 HTA7 histone H2A 7 0.03 OrthoFinder output from all 47 species
AT5G59870 HTA6 histone H2A 6 0.03 OrthoFinder output from all 47 species
Adi_g003557 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011159 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g011160 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011169 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011320 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034181 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g043980 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g047730 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g050953 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052170 HTA10 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g070713 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078410 HTA13 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082134 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14593 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23857 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06841 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01994 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19828.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G033300.1 HTA10, Ceric.01G033300 histone *(H2A) & original description: pacid=50592657... 0.06 OrthoFinder output from all 47 species
Ceric.01G127000.1 HTA7, Ceric.01G127000 histone *(H2A) & original description: pacid=50592416... 0.06 OrthoFinder output from all 47 species
Ceric.01G127100.1 HTA6, Ceric.01G127100 histone *(H2A) & original description: pacid=50591885... 0.06 OrthoFinder output from all 47 species
Ceric.06G046500.1 HTA7, Ceric.06G046500 histone *(H2A) & original description: pacid=50619602... 0.07 OrthoFinder output from all 47 species
Ceric.08G041700.1 HTA6, Ceric.08G041700 histone *(H2A) & original description: pacid=50638647... 0.06 OrthoFinder output from all 47 species
Ceric.08G041800.1 HTA7, Ceric.08G041800 histone *(H2A) & original description: pacid=50638414... 0.05 OrthoFinder output from all 47 species
Ceric.09G005600.1 HTA6, Ceric.09G005600 histone *(H2A) & original description: pacid=50587119... 0.05 OrthoFinder output from all 47 species
Ceric.11G083100.1 HTA7, Ceric.11G083100 histone *(H2A) & original description: pacid=50596723... 0.06 OrthoFinder output from all 47 species
Ceric.16G070100.1 HTA10, Ceric.16G070100 histone *(H2A) & original description: pacid=50590230... 0.05 OrthoFinder output from all 47 species
Ceric.18G042300.1 HTA7, Ceric.18G042300 histone *(H2A) & original description: pacid=50622244... 0.05 OrthoFinder output from all 47 species
Ceric.1Z006200.1 HTA7, Ceric.1Z006200 histone *(H2A) & original description: pacid=50569283... 0.06 OrthoFinder output from all 47 species
Ceric.31G042200.1 HTA2, Ceric.31G042200 histone *(H2A) & original description: pacid=50574126... 0.02 OrthoFinder output from all 47 species
Ceric.37G035900.1 HTA6, Ceric.37G035900 histone *(H2A) & original description: pacid=50615631... 0.05 OrthoFinder output from all 47 species
Ceric.37G036300.1 HTA6, Ceric.37G036300 histone *(H2A) & original description: pacid=50616218... 0.06 OrthoFinder output from all 47 species
Ceric.37G036400.1 HTA7, Ceric.37G036400 histone *(H2A) & original description: pacid=50615787... 0.05 OrthoFinder output from all 47 species
Cre06.g264750 HTA10 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Cre06.g264950 HTA10 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Cre06.g265350 HTA10 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Cre06.g266700 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre06.g268050 HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from all 47 species
Cre06.g268300 HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from all 47 species
Cre06.g271350 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre06.g273900 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre06.g274200 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre06.g274800 HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from all 47 species
Cre06.g275850 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre06.g276500 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre06.g276950 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre12.g504500 HTA10 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Cre12.g504750 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre12.g505550 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre12.g506250 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre13.g570100 HTA10 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Cre13.g590800 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre13.g591150 HTA10 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g708550 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre17.g709200 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre17.g710400 HTA10 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Cre17.g711700 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre17.g713400 HTA10 Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from all 47 species
Cre17.g714500 HTA10 Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Dac_g13937 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g34896 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g32293 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29975 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011034001 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
GSVIVT01025533001 HTA12 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
GSVIVT01031123001 HTA7 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Gb_06384 HTA6 histone (H2A) 0.04 OrthoFinder output from all 47 species
Gb_07070 GAMMA-H2AX,... histone (H2A) 0.05 OrthoFinder output from all 47 species
Gb_12570 RAT5, HTA1, ATHTA1 histone (H2A) 0.03 OrthoFinder output from all 47 species
Gb_25326 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Gb_37579 HTA7 histone (H2A) 0.02 OrthoFinder output from all 47 species
Len_g05644 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37716 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426943g0010 HTA7 histone (H2A) 0.03 OrthoFinder output from all 47 species
MA_130065g0010 HTA6 histone (H2A) 0.02 OrthoFinder output from all 47 species
MA_169054g0020 HTA10 histone (H2A) 0.04 OrthoFinder output from all 47 species
MA_213048g0010 HTA7 histone (H2A) 0.07 OrthoFinder output from all 47 species
MA_22203g0020 RAT5, HTA1, ATHTA1 histone (H2A) 0.05 OrthoFinder output from all 47 species
MA_427046g0010 RAT5, HTA1, ATHTA1 histone (H2A) 0.07 OrthoFinder output from all 47 species
MA_962778g0010 HTA7 histone (H2A) 0.06 OrthoFinder output from all 47 species
Mp2g00760.1 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Mp3g00840.1 HTA10 histone (H2A) 0.03 OrthoFinder output from all 47 species
Msp_g11191 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g29485 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06551 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09402 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g09403 HTA7 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28966 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c5_1791V3.1 HTA10, Pp3c5_1791 histone H2A 10 0.02 OrthoFinder output from all 47 species
Pp3c5_1800V3.1 HTA10, Pp3c5_1800 histone H2A 10 0.02 OrthoFinder output from all 47 species
Pp3c6_29410V3.1 HTA10, Pp3c6_29410 histone H2A 10 0.02 OrthoFinder output from all 47 species
Sam_g10764 No alias histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10765 No alias histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g29426 No alias histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g48398 No alias histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Smo166626 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Smo170948 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Smo73637 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Solyc01g099410.3.1 HTA7, Solyc01g099410 histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc03g005220.4.1 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc06g084430.4.1 GAMMA-H2AX,... histone (H2A) 0.08 OrthoFinder output from all 47 species
Solyc09g010400.3.1 HTA12, Solyc09g010400 histone (H2A) 0.06 OrthoFinder output from all 47 species
Solyc09g074300.1.1 GAMMA-H2AX,... histone (H2A) 0.08 OrthoFinder output from all 47 species
Solyc10g006560.4.1 HTA10, Solyc10g006560 histone (H2A) 0.04 OrthoFinder output from all 47 species
Solyc11g073250.2.1 HTA12, Solyc11g073250 histone (H2A) 0.06 OrthoFinder output from all 47 species
Solyc11g073260.2.1 HTA12, Solyc11g073260 histone (H2A) 0.04 OrthoFinder output from all 47 species
Solyc12g005270.2.1 HTA10, Solyc12g005270 histone (H2A) 0.06 OrthoFinder output from all 47 species
Spa_g03104 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g03105 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g03210 HTA6 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g03522 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g03889 HTA7 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g16293 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29751 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32347 HTA6 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g32923 HTA6 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g34289 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45415 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46345 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48382 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11136 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14389 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010515_P001 HTA2, Zm00001e010515 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e010516_P001 RAT5, HTA1,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Zm00001e011643_P001 HTA6, Zm00001e011643 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e012144_P001 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
Zm00001e020483_P001 HTA6, Zm00001e020483 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e033014_P001 HTA6, Zm00001e033014 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e034815_P001 HTA12, Zm00001e034815 histone (H2A) 0.07 OrthoFinder output from all 47 species
Zm00001e035183_P002 RAT5, HTA1,... histone (H2A) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 14 90
IPR032454 Histone_H2A_C 93 126
No external refs found!