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  5. LOC_Os12g10660.1

LOC_Os12g10660.1 (LZF1, STH3, DBB3,...)


Aliases : LZF1, STH3, DBB3, LOC_Os12g10660

Description : transcription factor (BBX-DBB)


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g10660.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00204180 STO,... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AMTR_s00182p00043350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT2G47890 No alias B-box type zinc finger protein with CCT domain 0.03 OrthoFinder output from all 47 species
Aspi01Gene08384.t1 LZF1, STH3,... BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62651.t1 Aspi01Gene62651 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62651.t2 Aspi01Gene62651 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20190 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G021600.1 Ceric.11G021600 BBX class-IV transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.27G000600.1 LZF1, STH3,... BBX class-IV transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.31G000800.1 LZF1, STH3,... BBX class-IV transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g02213 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08980 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024204001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.01 OrthoFinder output from all 47 species
LOC_Os06g49880.1 STH2, LOC_Os06g49880 transcription factor (BBX-DBB) 0.04 OrthoFinder output from all 47 species
Len_g59223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g21663 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35258 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g36960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06044 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07843 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28592 STO BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20549 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03820 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g089240.2.1 STH2, Solyc12g089240 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
Spa_g56814 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007720_P001 STO, Zm00001e007720 transcription factor (BBX-DBB) 0.04 OrthoFinder output from all 47 species
Zm00001e013262_P001 Zm00001e013262 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
Zm00001e041335_P001 Zm00001e041335 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 5 46
IPR000315 Znf_B-box 64 99
No external refs found!