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  5. LOC_Os12g10540.3

LOC_Os12g10540.3 (SHP2, AGL5, LOC_Os12g10540)


Aliases : SHP2, AGL5, LOC_Os12g10540

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g10540.3
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00214260 AGL66,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00089p00081270 PI,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G45650 AGL6 AGAMOUS-like 6 0.03 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.05 OrthoFinder output from all 47 species
AT4G11880 AGL14 AGAMOUS-like 14 0.04 OrthoFinder output from all 47 species
AT5G13790 AGL15 AGAMOUS-like 15 0.03 OrthoFinder output from all 47 species
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT5G51860 No alias K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g001519 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g045544 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20111 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28162 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11010 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13176 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26927 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15812.t2 AGL13, Aspi01Gene15812 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15814.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17771.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17780.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17809.t1 AGL6, Aspi01Gene17809 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17819.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17826.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19457.t1 AGL16, Aspi01Gene19457 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44619.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44620.t2 AGL6, Aspi01Gene44620 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48068.t1 AGL30, Aspi01Gene48068 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011722 No alias MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0684.g082058 AGL21 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g33793 AGL14 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.36G037100.1 AGL13, Ceric.36G037100 not classified & original description: pacid=50568619... 0.02 OrthoFinder output from all 47 species
Ceric.39G001800.1 AGL104, Ceric.39G001800 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g06265 AGL15 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g19044 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07314 AGL21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07325 AGL8, FUL not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21427 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01006592001 AGL61, DIA RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01008139001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01008806001 PI RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
GSVIVT01012110001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01012250001 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.05 OrthoFinder output from all 47 species
GSVIVT01018450001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01019883001 GL19, AGL19 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01022182001 AGL104 RNA biosynthesis.transcriptional activation.MADS box... 0.06 OrthoFinder output from all 47 species
GSVIVT01025945001 STK, AGL11 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01027577001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01033253001 AGL15 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01037024001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01037026001 AGL61, DIA RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Gb_03068 AGL16 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Gb_16301 STK, AGL11 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os01g11510.1 LOC_Os01g11510 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os03g11614.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
LOC_Os03g54170.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Len_g10100 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g20789 SHP2, AGL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16827 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37644 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10256834g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_19007g0020 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_25342g0010 AGL16 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
MA_2986g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_333471g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_34737g0010 AGL17 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_770623g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_8748850g0010 AGL24 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_9841429g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Msp_g06433 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g21617 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g26027 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21770 AGL65 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04651 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28516 AGL66 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42970 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44137 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g51490 AGL24 regulatory protein *(SVP/AGL24) of floral meristem... 0.02 OrthoFinder output from all 47 species
Pir_g54533 MAF2, AGL31 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g64963 AGL6 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12246 AGL30 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25142 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25344 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08455 AGL21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62136 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217 AGL15 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004031 AGL29 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018504 AGL42 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020974 GL19, AGL19 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g15459 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15626 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo121275 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Solyc01g093960.3.1 AGL6, Solyc01g093960 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Solyc01g106710.1.1 AGL62, Solyc01g106710 component MED19 of head module of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Solyc06g064840.4.1 STK, AGL11,... no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.04 OrthoFinder output from all 47 species
Solyc10g044965.1.1 AGL21, Solyc10g044965 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc10g080030.2.1 AGL18, Solyc10g080030 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc11g010570.2.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Spa_g31312 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45506 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47543 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54311 AGL9, SEP3 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000167_P005 SOC1, AGL20,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e003667_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e005708_P002 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e006950_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e010125_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e023236_P005 AGL6, Zm00001e023236 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e027031_P001 PI, Zm00001e027031 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e027034_P001 PI, Zm00001e027034 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e030373_P001 AGL10, CAL1,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e032703_P001 AGL7, AP1, Zm00001e032703 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e033144_P001 AGL29, Zm00001e033144 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e034629_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e039048_P001 SOC1, AGL20,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e039774_P001 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 87 174
IPR002100 TF_MADSbox 10 57
No external refs found!