1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g09620.1

LOC_Os12g09620.1 (LOC_Os12g09620)


Aliases : LOC_Os12g09620

Description : no hits & (original description: none)


Gene families : OG0001180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001180_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g09620.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT4G02360 No alias Protein of unknown function, DUF538 0.03 OrthoFinder output from all 47 species
AT5G19590 No alias Protein of unknown function, DUF538 0.02 OrthoFinder output from all 47 species
Adi_g000421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02920 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18277.t1 Aspi01Gene18277 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65001.t1 Aspi01Gene65001 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_27093 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_131122g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g35459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g29481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g31775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016543 No alias not classified & original description: CDS=1-480 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017415 No alias not classified & original description: CDS=1-579 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s1739.g028136 No alias not classified & original description: CDS=1-480 0.07 OrthoFinder output from all 47 species
Sam_g28362 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018374_P001 Zm00001e018374 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e021276_P001 Zm00001e021276 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e027826_P001 Zm00001e027826 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007493 DUF538 39 145
No external refs found!