LOC_Os12g08900.1 (LOC_Os12g08900)


Aliases : LOC_Os12g08900

Description : no hits & (original description: none)


Gene families : OG0001578 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001578_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g08900.1
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00079410 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Aob_g21934 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene39847.t1 Aspi01Gene39847 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene39865.t1 Aspi01Gene39865 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0059.g034491 No alias not classified & original description: CDS=2-1894 0.03 OrthoFinder output from all 47 species
Azfi_s0506.g073949 No alias not classified & original description: CDS=1-1083 0.02 OrthoFinder output from all 47 species
Ceric.29G009200.1 Ceric.29G009200 not classified & original description: pacid=50624594... 0.02 OrthoFinder output from all 47 species
Ceric.39G004500.1 Ceric.39G004500 not classified & original description: pacid=50583341... 0.03 OrthoFinder output from all 47 species
Dcu_g25027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026502001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_00368 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g52900.1 LOC_Os01g52900 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Lfl_g09304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022604 No alias not classified & original description: CDS=40-3546 0.02 OrthoFinder output from all 47 species
Smo111238 No alias No description available 0.01 OrthoFinder output from all 47 species
Smo128027 No alias No description available 0.04 OrthoFinder output from all 47 species
Smo91270 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc11g005840.2.1 Solyc11g005840 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc11g005860.2.1 Solyc11g005860 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e021339_P001 Zm00001e021339 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000192 Aminotrans_V_dom 98 523
No external refs found!