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  5. LOC_Os12g06890.1

LOC_Os12g06890.1 (LOC_Os12g06890)


Aliases : LOC_Os12g06890

Description : NUP98 nucleoporin of nuclear pore complex


Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g06890.1

Target Alias Description ECC score Gene Family Method Actions
AT1G59660 No alias Nucleoporin autopeptidase 0.02 OrthoFinder output from all 47 species
Adi_g086878 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Ala_g06973 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Aop_g62728 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene59201.t1 Aspi01Gene59201 nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0012.g012932 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ceric.23G078300.1 Ceric.23G078300 nucleoporin of nuclear pore complex *(NUP98) & original... 0.06 OrthoFinder output from all 47 species
Cre02.g086887 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g07068 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g22620 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Gb_07065 No alias NUP98 nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Gb_29033 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Lfl_g06213 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
MA_10434126g0020 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Ore_g15205 NUP96, PRE, SAR3, MOS3 scaffold nucleoporin of nuclear pore complex & original... 0.02 OrthoFinder output from all 47 species
Ore_g22018 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Ore_g26256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12223 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Solyc04g007280.3.1 Solyc04g007280 NUP98 nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species
Tin_g11653 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR007230 Nup98_auto-Pept-S59_dom 782 928
No external refs found!