1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os11g39000.1

LOC_Os11g39000.1 (ATBS1, TMO7, BS1,...)


Aliases : ATBS1, TMO7, BS1, LOC_Os11g39000

Description : transcription factor (bHLH)


Gene families : OG0009654 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009654_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g39000.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT1G26945 KDR basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
AT1G74500 ATBS1, TMO7, BS1 activation-tagged BRI1(brassinosteroid-insensitive... 0.05 OrthoFinder output from all 47 species
AT3G28857 No alias basic helix-loop-helix (bHLH) DNA-binding family protein 0.05 OrthoFinder output from all 47 species
AT3G47710 BNQ3, BHLH161 BANQUO 3 0.04 OrthoFinder output from all 47 species
AT5G15160 BNQ2, BHLH134 BANQUO 2 0.03 OrthoFinder output from all 47 species
AT5G39860 PRE1, BNQ1, BHLH136 basic helix-loop-helix (bHLH) DNA-binding family protein 0.04 OrthoFinder output from all 47 species
GSVIVT01011380001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
LOC_Os02g51320.1 LOC_Os02g51320 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os03g07540.1 LOC_Os03g07540 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os04g54900.1 KDR, LOC_Os04g54900 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MA_148495g0010 KDR transcription factor (bHLH) 0.08 OrthoFinder output from all 47 species
MA_156285g0010 KDR transcription factor (bHLH) 0.08 OrthoFinder output from all 47 species
MA_9119217g0010 KDR transcription factor (bHLH) 0.08 OrthoFinder output from all 47 species
Solyc02g067380.4.1 KDR, Solyc02g067380 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc03g112995.1.1 KDR, Solyc03g112995 transcription factor (bHLH) 0.07 OrthoFinder output from all 47 species
Zm00001e000536_P001 KDR, Zm00001e000536 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005102 signaling receptor binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008083 growth factor activity IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030545 signaling receptor regulator activity IEP HCCA
MF GO:0030546 signaling receptor activator activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0048018 receptor ligand activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 23 64
No external refs found!