LOC_Os11g24560.1 (LOC_Os11g24560)

Aliases : LOC_Os11g24560

Description : component Sec23 of Sec23/24 cargo adaptor subcomplex

Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os11g24560.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00163370	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.05	OrthoFinder output from all 47 species
AT1G05520	No alias	Sec23/Sec24 protein transport family protein	0.09	OrthoFinder output from all 47 species
AT3G23660	No alias	Sec23/Sec24 protein transport family protein	0.14	OrthoFinder output from all 47 species
Adi_g083866	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.07	OrthoFinder output from all 47 species
Aev_g02536	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Aev_g04854	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Ala_g02545	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Als_g14171	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.07	OrthoFinder output from all 47 species
Aob_g05331	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Aop_g18354	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.06	OrthoFinder output from all 47 species
Aspi01Gene17513.t1	Aspi01Gene17513	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Azfi_s0118.g046613	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.11	OrthoFinder output from all 47 species
Cba_g16653	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.06	OrthoFinder output from all 47 species
Cba_g18092	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Ceric.01G119200.1	Ceric.01G119200	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.12	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001408.15	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.03	OrthoFinder output from all 47 species
Cre03.g180850	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	OrthoFinder output from all 47 species
Dcu_g08265	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Dcu_g08281	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
GSVIVT01026719001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.09	OrthoFinder output from all 47 species
GSVIVT01031567001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.03	OrthoFinder output from all 47 species
Gb_05558	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.1	OrthoFinder output from all 47 species
Len_g09133	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Lfl_g02282	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.07	OrthoFinder output from all 47 species
MA_392802g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp7g12190.1	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.11	OrthoFinder output from all 47 species
Msp_g18554	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.06	OrthoFinder output from all 47 species
Ore_g15381	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g25550	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Pir_g29188	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Pp3c10_18520V3.1	Pp3c10_18520	Sec23/Sec24 protein transport family protein	0.03	OrthoFinder output from all 47 species
Ppi_g04623	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012549	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Sam_g10197	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Smo168140	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.14	OrthoFinder output from all 47 species
Solyc01g081070.3.1	Solyc01g081070	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
Spa_g17950	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.06	OrthoFinder output from all 47 species
Spa_g53620	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.07	OrthoFinder output from all 47 species
Tin_g03473	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Zm00001e008888_P001	Zm00001e008888	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.18	OrthoFinder output from all 47 species
Zm00001e009959_P002	Zm00001e009959	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.1	OrthoFinder output from all 47 species
Zm00001e021415_P001	Zm00001e021415	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.24	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	HCCA
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
CC	GO:0008250	oligosaccharyltransferase complex	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
CC	GO:0030126	COPI vesicle coat	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
BP	GO:0042176	regulation of protein catabolic process	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012990	Sec23_24_beta_S	431	535
IPR006896	Sec23/24_trunk_dom	145	420
IPR006900	Sec23/24_helical_dom	549	647
IPR006895	Znf_Sec23_Sec24	64	103
IPR007123	Gelsolin-like_dom	663	749

External Links

No external refs found!

LOC_Os11g24560.1 (LOC_Os11g24560)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation