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  5. LOC_Os11g11020.1

LOC_Os11g11020.1 (LOC_Os11g11020)


Aliases : LOC_Os11g11020

Description : RNA editing factor (MORF)


Gene families : OG0008097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g11020.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT1G11430 No alias plastid developmental protein DAG, putative 0.03 OrthoFinder output from all 47 species
AT2G35240 No alias plastid developmental protein DAG, putative 0.04 OrthoFinder output from all 47 species
AT4G20020 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
MA_5791g0010 No alias RNA editing factor (MORF) 0.04 OrthoFinder output from all 47 species
Solyc02g079210.3.1 Solyc02g079210 RNA editing factor (MORF) 0.02 OrthoFinder output from all 47 species
Solyc05g054960.4.1 Solyc05g054960 RNA editing factor (MORF) 0.03 OrthoFinder output from all 47 species
Zm00001e021318_P001 Zm00001e021318 RNA editing factor (MORF) 0.06 OrthoFinder output from all 47 species
Zm00001e029854_P001 Zm00001e029854 RNA editing factor (MORF) 0.04 OrthoFinder output from all 47 species
Zm00001e040293_P001 Zm00001e040293 RNA editing factor (MORF) 0.04 OrthoFinder output from all 47 species
Zm00001e041660_P001 Zm00001e041660 RNA editing factor (MORF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!