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  5. LOC_Os11g04950.1

LOC_Os11g04950.1 (SMU2, LOC_Os11g04950)


Aliases : SMU2, LOC_Os11g04950

Description : Suppressor of mec-8 and unc-52 protein homolog 2 OS=Arabidopsis thaliana (sp|o48713|smu2_arath : 589.0)


Gene families : OG0004764 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004764_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g04950.1

Target Alias Description ECC score Gene Family Method Actions
Als_g27563 SMU2 component *(SMU2) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Aob_g17901 SMU2 component *(SMU2) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Aop_g29624 SMU2 component *(SMU2) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Cre16.g688750 SMU2 Suppressor of mec-8 and unc-52 protein homolog 2... 0.03 OrthoFinder output from all 47 species
Gb_08082 SMU2 Suppressor of mec-8 and unc-52 protein homolog 2... 0.03 OrthoFinder output from all 47 species
Mp5g17010.1 SMU2 Suppressor of mec-8 and unc-52 protein homolog 2... 0.02 OrthoFinder output from all 47 species
Smo122486 SMU2 Suppressor of mec-8 and unc-52 protein homolog 2... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012916 RED_N 8 221
IPR012492 RED_C 445 550
No external refs found!