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  5. LOC_Os10g42690.1

LOC_Os10g42690.1 (LOC_Os10g42690)


Aliases : LOC_Os10g42690

Description : histone demethylase (PKDM8). transcription factor (JUMONJI)


Gene families : OG0002434 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002434_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os10g42690.1

Target Alias Description ECC score Gene Family Method Actions
Cre02.g078700 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
Len_g20483 No alias histone demethylase *(PKDM8) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 280 403
IPR004198 Znf_C5HC2 502 554
IPR003349 JmjN 104 136
No external refs found!