LOC_Os10g41230.1 (HB4, ATHB-4, ATHB4,...)

Aliases : HB4, ATHB-4, ATHB4, LOC_Os10g41230

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000538 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000538_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g41230.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00245530	HAT9,...	No description available	0.03	OrthoFinder output from all 47 species
AT2G22800	HAT9	Homeobox-leucine zipper protein family	0.02	OrthoFinder output from all 47 species
AT4G37790	HAT22	Homeobox-leucine zipper protein family	0.04	OrthoFinder output from all 47 species
Adi_g007839	HAT22	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g021164	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g048337	HB-2, ATHB2, ATHB-2, HAT4	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g067938	HB-2, ATHB2, ATHB-2, HAT4	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g082135	HAT22	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aev_g49730	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aop_g28789	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000622	HAT14	HD-ZIP I/II-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Cba_g70020	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.03G085600.1	HAT22, Ceric.03G085600	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.04G000400.1	HAT14, Ceric.04G000400	HD-ZIP I/II-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Dac_g10914	HAT3	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g07334	HAT3	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
LOC_Os03g12860.1	HAT22, LOC_Os03g12860	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
LOC_Os06g04870.1	HB4, ATHB-4,...	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species
Len_g11143	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Msp_g47696	HB4, ATHB-4, ATHB4	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Nbi_g34557	HAT14	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008373	HAT14	not classified & original description: CDS=1-423	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017947	HAT14	not classified & original description: CDS=450-2336	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0212.g025950	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Smo139631	HAT14	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Solyc02g063520.3.1	HAT22, Solyc02g063520	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Spa_g25221	HB4, ATHB-4, ATHB4	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Zm00001e000928_P002	HAT22, Zm00001e000928	transcription factor (HD-ZIP I/II)	0.06	OrthoFinder output from all 47 species
Zm00001e003763_P001	HAT14, Zm00001e003763	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Zm00001e007343_P003	HB-2, ATHB2,...	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Zm00001e009939_P001	HAT14, Zm00001e009939	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e020345_P001	ATHB17, HB17,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e030251_P001	HAT9, Zm00001e030251	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
Zm00001e038644_P001	HAT22, Zm00001e038644	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005516	calmodulin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006712	HD-ZIP_N	19	135
IPR003106	Leu_zip_homeo	212	246
IPR001356	Homeobox_dom	156	210

External Links

No external refs found!

LOC_Os10g41230.1 (HB4, ATHB-4, ATHB4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation