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  5. LOC_Os10g39220.1

LOC_Os10g39220.1 (TOM3, LOC_Os10g39220)


Aliases : TOM3, LOC_Os10g39220

Description : TOM1 tobamovirus multiplication replication host factor


Gene families : OG0000961 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g39220.1

Target Alias Description ECC score Gene Family Method Actions
AT2G02180 TOM3 tobamovirus multiplication protein 3 0.04 OrthoFinder output from all 47 species
Adi_g006847 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.03 OrthoFinder output from all 47 species
Aev_g24309 TOM3 tobamovirus multiplication replication host factor... 0.04 OrthoFinder output from all 47 species
Aspi01Gene35676.t1 TOM1, ATTOM1,... tobamovirus multiplication replication host factor... 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013294 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.02 OrthoFinder output from all 47 species
Azfi_s0113.g045844 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.90 THH1 No description available 0.02 OrthoFinder output from all 47 species
Dac_g38007 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.02 OrthoFinder output from all 47 species
Mp3g00660.1 TOM3 TOM1 tobamovirus multiplication replication host factor 0.03 OrthoFinder output from all 47 species
Pnu_g05905 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.03 OrthoFinder output from all 47 species
Smo167621 TOM3 External stimuli response.biotic stress.tobamovirus... 0.03 OrthoFinder output from all 47 species
Tin_g09694 TOM1, ATTOM1 tobamovirus multiplication replication host factor... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009457 THH1/TOM1/TOM3_dom 24 294
No external refs found!