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  5. LOC_Os10g36420.1

LOC_Os10g36420.1 (AFO, YAB1, FIL, LOC_Os10g36420)


Aliases : AFO, YAB1, FIL, LOC_Os10g36420

Description : transcription factor (YABBY)


Gene families : OG0002690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002690_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g36420.1
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00199030 CRC,... RNA biosynthesis.transcriptional activation.C2C2... 0.06 OrthoFinder output from all 47 species
AMTR_s00078p00029420 YAB5,... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AMTR_s00085p00032940 AFO, YAB1, FIL,... RNA biosynthesis.transcriptional activation.C2C2... 0.07 OrthoFinder output from all 47 species
AT1G23420 INO Plant-specific transcription factor YABBY family protein 0.06 OrthoFinder output from all 47 species
AT2G45190 AFO, YAB1, FIL Plant-specific transcription factor YABBY family protein 0.14 OrthoFinder output from all 47 species
AT4G00180 YAB3 Plant-specific transcription factor YABBY family protein 0.06 OrthoFinder output from all 47 species
GSVIVT01001269001 AFO, YAB1, FIL RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
GSVIVT01012246001 CRC RNA biosynthesis.transcriptional activation.C2C2... 0.05 OrthoFinder output from all 47 species
GSVIVT01015567001 YAB5 RNA biosynthesis.transcriptional activation.C2C2... 0.05 OrthoFinder output from all 47 species
GSVIVT01037533001 YAB2 RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
LOC_Os03g11600.1 CRC, LOC_Os03g11600 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
MA_407206g0010 YAB5 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Solyc01g010240.3.1 CRC, Solyc01g010240 transcription factor (YABBY) 0.05 OrthoFinder output from all 47 species
Solyc01g091010.3.1 AFO, YAB1, FIL,... transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Solyc08g079100.3.1 AFO, YAB1, FIL,... transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Solyc11g071810.2.1 YAB2, Solyc11g071810 transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Zm00001e004396_P001 AFO, YAB1, FIL,... transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e007412_P003 AFO, YAB1, FIL,... transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Zm00001e012387_P001 YAB5, Zm00001e012387 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e012388_P001 YAB5, Zm00001e012388 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e012577_P001 AFO, YAB1, FIL,... transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Zm00001e015245_P002 AFO, YAB1, FIL,... transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Zm00001e032845_P002 YAB2, Zm00001e032845 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e038717_P002 CRC, Zm00001e038717 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e041322_P001 AFO, YAB1, FIL,... transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007275 multicellular organism development IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006780 YABBY 56 108
IPR006780 YABBY 198 267
No external refs found!