LOC_Os10g35550.1 (STA1, EMB2770, LOC_Os10g35550)

Aliases : STA1, EMB2770, LOC_Os10g35550

Description : protein factor PRPF6/PRP1/STA1 of U5 small nuclear ribonucleoprotein particle (snRNP)

Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g35550.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g055878	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene55341.t1	STA1, EMB2770,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.1Z128700.1	STA1, EMB2770,...	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000880.19	STA1, EMB2770	Protein STABILIZED1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre14.g633650	STA1, EMB2770	RNA processing.RNA splicing.U2-type-intron-specific...	0.01	OrthoFinder output from all 47 species
Dcu_g14994	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Len_g00746	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Ore_g19399	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Ppi_g32052	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Sam_g26501	No alias	component *(PRPF6) of U5 snRNP complex & original...	0.01	OrthoFinder output from all 47 species
Tin_g02882	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Zm00001e018293_P001	STA1, EMB2770,...	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010491	PRP1_N	115	279

External Links

No external refs found!