- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LOC_Os10g13670
Description : Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana (sp|q9s752|lofg2_arath : 361.0)
Gene families : OG0000967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000967_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os10g13670.1 | |
| Cluster | HCCA: Cluster_199 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G19080 | No alias | RING/U-box superfamily protein | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g096191 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g12690 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g01752 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene01838.t1 | Aspi01Gene01838 | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0388.g067614 | No alias | not classified & original description: CDS=312-821 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g23558 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.36G047100.1 | Ceric.36G047100 | E3 ubiquitin ligase *(LOG2/LUL) & original description:... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g04523 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g27346 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g03893 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g13620 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01000020001 | No alias | Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025175001 | No alias | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os05g33000.2 | LOC_Os05g33000 | Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis... | 0.01 | OrthoFinder output from all 47 species | |
| Len_g02259 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Nbi_g24795 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g02478 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g00968 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Solyc04g054680.3.1 | Solyc04g054680 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis... | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g10698 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g41480 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g50415 | No alias | E3 ubiquitin ligase *(LOG2/LUL) & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |