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  5. LOC_Os10g02584.3

LOC_Os10g02584.3 (ATBPC2, BPC2,...)


Aliases : ATBPC2, BPC2, BBR/BPC2, LOC_Os10g02584

Description : transcription factor (BBR/BPC)


Gene families : OG0000626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g02584.3
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
Adi_g114563 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g119680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene57842.t1 BPC3, ATBPC3,... BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05153 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.33G015100.1 BPC3, ATBPC3,... BBR/BPC-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07354 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009845001 BPC6, BBR/BPC6, ATBPC6 RNA biosynthesis.transcriptional activation.BBR/BPC... 0.06 OrthoFinder output from all 47 species
GSVIVT01011589001 ATBPC1, BPC1, BBR RNA biosynthesis.transcriptional activation.BBR/BPC... 0.02 OrthoFinder output from all 47 species
GSVIVT01024162001 ATBPC4, BPC4, BBR RNA biosynthesis.transcriptional activation.BBR/BPC... 0.04 OrthoFinder output from all 47 species
Len_g05321 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38324 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16969 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003633_P001 ATBPC2, BPC2,... transcription factor (BBR/BPC) 0.04 OrthoFinder output from all 47 species
Zm00001e021942_P001 ATBPC2, BPC2,... transcription factor (BBR/BPC) 0.04 OrthoFinder output from all 47 species
Zm00001e036601_P001 BPC6, BBR/BPC6,... transcription factor (BBR/BPC) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010409 GAGA-bd_tscrpt_act 1 341
No external refs found!