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  5. LOC_Os09g36920.1

LOC_Os09g36920.1 (LOC_Os09g36920)


Aliases : LOC_Os09g36920

Description : La-related protein 1B OS=Arabidopsis thaliana (sp|q8rwr2|lrp1b_arath : 82.0)


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g36920.1
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Adi_g020044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087231 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Als_g14335 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Aop_g02092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06975 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g14982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07940 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g20639 No alias BBX class-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037494001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Lfl_g07864 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Pir_g19994 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g22650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013287 No alias not classified & original description: CDS=1-1641 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022179 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13658 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g27548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g073550.3.1 Solyc06g073550 XRN4-exoribonuclease cofactor (LARP1) 0.03 OrthoFinder output from all 47 species
Spa_g02549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g52362 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006436_P002 Zm00001e006436 La-related protein 1B OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e011617_P001 Zm00001e011617 La-related protein 1B OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 424 481
No external refs found!