LOC_Os09g36710.1 (PAD2, LOC_Os09g36710)

Aliases : PAD2, LOC_Os09g36710

Description : component alpha type-4 of 26S proteasome

Gene families : OG0004574 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004574_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g36710.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00097510	PAD2,...	Protein degradation.26S proteasome.20S core...	0.02	OrthoFinder output from all 47 species
AT3G51260	PAD1	20S proteasome alpha subunit PAD1	0.11	OrthoFinder output from all 47 species
Aev_g04420	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Aop_g05904	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.08	OrthoFinder output from all 47 species
Aspi01Gene69344.t1	PAD2, Aspi01Gene69344	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene69347.t1	PAD1, Aspi01Gene69347	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
Azfi_s0460.g072060	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
Ceric.01G018100.1	PAD2, Ceric.01G018100	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020830.84	PAD2	Protein degradation.26S proteasome.20S core...	0.04	OrthoFinder output from all 47 species
Cre01.g030850	PAD1	Protein degradation.26S proteasome.20S core...	0.1	OrthoFinder output from all 47 species
Dac_g44785	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
Dcu_g02688	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
Dde_g10478	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Ehy_g20615	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
GSVIVT01018748001	PAD2	Protein degradation.26S proteasome.20S core...	0.02	OrthoFinder output from all 47 species
GSVIVT01024037001	PAD2	Protein degradation.26S proteasome.20S core...	0.03	OrthoFinder output from all 47 species
Gb_06267	PAD2	component alpha type-4 of 26S proteasome	0.03	OrthoFinder output from all 47 species
MA_10436167g0010	PAD1	component alpha type-4 of 26S proteasome	0.06	OrthoFinder output from all 47 species
Mp6g07820.1	PAD2	component alpha type-4 of 26S proteasome	0.12	OrthoFinder output from all 47 species
Msp_g00381	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.07	OrthoFinder output from all 47 species
Nbi_g00471	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Pir_g00896	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Ppi_g18325	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Solyc01g111450.3.1	PAD2, Solyc01g111450	component alpha type-4 of 26S proteasome	0.06	OrthoFinder output from all 47 species
Spa_g22440	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Spa_g30453	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Spa_g39445	PAD2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
Zm00001e010250_P002	PAD2, Zm00001e010250	component alpha type-4 of 26S proteasome	0.07	OrthoFinder output from all 47 species
Zm00001e024689_P001	PAD2, Zm00001e024689	component alpha type-4 of 26S proteasome	0.05	OrthoFinder output from all 47 species
Zm00001e035996_P001	PAD2, Zm00001e035996	component alpha type-4 of 26S proteasome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	IEA	Interproscan
MF	GO:0004298	threonine-type endopeptidase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEA	Interproscan
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	IEA	Interproscan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	27	210
IPR000426	Proteasome_asu_N	4	26

External Links

No external refs found!

LOC_Os09g36710.1 (PAD2, LOC_Os09g36710)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation