1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os09g34010.1

LOC_Os09g34010.1 (LOC_Os09g34010)


Aliases : LOC_Os09g34010

Description : IF-2 translation initiation factor


Gene families : OG0001742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001742_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g34010.1

Target Alias Description ECC score Gene Family Method Actions
AT4G11160 No alias Translation initiation factor 2, small GTP-binding protein 0.03 OrthoFinder output from all 47 species
Aob_g17529 No alias translation initiation factor *(IF-2) & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G043600.1 Ceric.08G043600 translation initiation factor *(IF-2) & original... 0.04 OrthoFinder output from all 47 species
Cre07.g341850 FUG1 Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Gb_40793 No alias IF-2 translation initiation factor 0.02 OrthoFinder output from all 47 species
MA_27343g0010 No alias IF-2 translation initiation factor 0.03 OrthoFinder output from all 47 species
Pir_g13551 No alias translation initiation factor *(IF-2) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13617 No alias translation initiation factor *(IF-2) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 200 356
IPR023115 TIF_IF2_dom3 489 586
No external refs found!