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  5. LOC_Os09g32800.1

LOC_Os09g32800.1 (PBF1, LOC_Os09g32800)


Aliases : PBF1, LOC_Os09g32800

Description : component beta type-6 of 26S proteasome


Gene families : OG0004409 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004409_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g32800.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00220020 PBF1,... Protein degradation.26S proteasome.20S core... 0.02 OrthoFinder output from all 47 species
AT3G60820 PBF1 N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.08 OrthoFinder output from all 47 species
Aev_g01998 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Als_g08527 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Aop_g00288 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.09 OrthoFinder output from all 47 species
Azfi_s0392.g067771 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Cba_g31823 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.24G072400.1 PBF1, Ceric.24G072400 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.5 PBF1 Protein degradation.26S proteasome.20S core... 0.1 OrthoFinder output from all 47 species
Cre26.g756797 PBF1 Protein degradation.26S proteasome.20S core... 0.2 OrthoFinder output from all 47 species
Dac_g02574 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Dcu_g00884 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Dde_g01948 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
GSVIVT01027613001 PBF1 Protein degradation.26S proteasome.20S core... 0.07 OrthoFinder output from all 47 species
Gb_25087 PBF1 component beta type-6 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Lfl_g00743 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
MA_207139g0010 PBF1 component beta type-6 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Mp1g12450.1 PBF1 component beta type-6 of 26S proteasome 0.09 OrthoFinder output from all 47 species
Msp_g43692 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Nbi_g43343 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Pir_g12796 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Pp3c16_16960V3.1 PBF1, Pp3c16_16960 N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.01 OrthoFinder output from all 47 species
Sam_g09893 No alias beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Smo94273 PBF1 Protein degradation.26S proteasome.20S core... 0.06 OrthoFinder output from all 47 species
Solyc02g084920.3.1 PBF1, Solyc02g084920 component beta type-6 of 26S proteasome 0.09 OrthoFinder output from all 47 species
Spa_g13091 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Spa_g16539 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Tin_g30516 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Zm00001e010121_P001 PBF1, Zm00001e010121 component beta type-6 of 26S proteasome 0.09 OrthoFinder output from all 47 species
Zm00001e034624_P005 PBF1, Zm00001e034624 component beta type-6 of 26S proteasome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 11 206
No external refs found!