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  5. LOC_Os09g31450.1

LOC_Os09g31450.1 (LOC_Os09g31450)


Aliases : LOC_Os09g31450

Description : pathogen polygalacturonase inhibitor (PGIP)


Gene families : OG0002518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002518_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g31450.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00219620 PGIP2, ATPGIP2,... Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G06860 ATPGIP1, PGIP1 polygalacturonase inhibiting protein 1 0.04 OrthoFinder output from all 47 species
Aev_g34575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g01380.1 PGIP2, ATPGIP2,... pathogen polygalacturonase inhibitor (PGIP) 0.02 OrthoFinder output from all 47 species
LOC_Os05g01444.1 ATPGIP1, PGIP1,... pathogen polygalacturonase inhibitor (PGIP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 153 213
IPR013210 LRR_N_plant-typ 36 68
IPR001611 Leu-rich_rpt 270 289
IPR001611 Leu-rich_rpt 294 310
No external refs found!