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  5. LOC_Os09g29630.1

LOC_Os09g29630.1 (LOC_Os09g29630)


Aliases : LOC_Os09g29630

Description : tRNA cytidine-methyltransferase (TRM4)


Gene families : OG0003443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g29630.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00028880 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
AT2G22400 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.16 OrthoFinder output from all 47 species
Adi_g022731 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Aev_g04163 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Ala_g19092 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Aop_g05031 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene05702.t1 Aspi01Gene05702 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Azfi_s0016.g014403 No alias EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Ceric.01G076100.1 Ceric.01G076100 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020562.25 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
Cre03.g179860 No alias RNA processing.RNA modification.rRNA/tRNA... 0.12 OrthoFinder output from all 47 species
Dcu_g13064 No alias EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Ehy_g13681 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
GSVIVT01003416001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.06 OrthoFinder output from all 47 species
Gb_17436 No alias tRNA cytidine-methyltransferase (TRM4) 0.03 OrthoFinder output from all 47 species
Lfl_g16441 No alias EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
MA_8979g0030 No alias tRNA cytidine-methyltransferase (TRM4) 0.02 OrthoFinder output from all 47 species
Mp3g05200.1 No alias tRNA cytidine-methyltransferase (TRM4) 0.11 OrthoFinder output from all 47 species
Pir_g10405 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Sam_g49641 No alias EC_2.1 transferase transferring one-carbon group &... 0.09 OrthoFinder output from all 47 species
Smo418525 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
Solyc05g051520.3.1 Solyc05g051520 tRNA cytidine-methyltransferase (TRM4) 0.2 OrthoFinder output from all 47 species
Tin_g45505 No alias EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Zm00001e034437_P004 Zm00001e034437 tRNA cytidine-methyltransferase (TRM4) 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 185 370
No external refs found!