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  5. LOC_Os09g29360.1

LOC_Os09g29360.1 (LOC_Os09g29360)


Aliases : LOC_Os09g29360

Description : transcription factor (bHLH)


Gene families : OG0000768 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g29360.1
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272070 FMA,... RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
AMTR_s00008p00198780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
AT1G22490 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G46810 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G65320 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g03090 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10378 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27262 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09821 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18861.t1 FMA, Aspi01Gene18861 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29143.t1 FMA, Aspi01Gene29143 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38670.t1 FMA, Aspi01Gene38670 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53774.t1 SPCH, Aspi01Gene53774 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene60126.t1 FMA, Aspi01Gene60126 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010552 FMA bHLH-type transcription factor & original description: CDS=1-1698 0.02 OrthoFinder output from all 47 species
Azfi_s0129.g048899 MUTE bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Cba_g06394 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G040300.1 Ceric.21G040300 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.23G002400.1 FMA, Ceric.23G002400 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.24G025300.1 FMA, Ceric.24G025300 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g12824 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30062 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000012001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
GSVIVT01003437001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01017892001 MUTE RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Gb_17233 FMA transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_21105 FMA transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os02g15760.1 SPCH, LOC_Os02g15760 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os02g46560.1 LOC_Os02g46560 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Len_g41769 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35034 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_686524g0010 FMA transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Nbi_g15543 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g21615 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63346 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012172 FMA bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0220.g026173 MUTE not classified & original description: CDS=1-492 0.02 OrthoFinder output from all 47 species
Sam_g28288 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g007410.4.1 SPCH, Solyc03g007410 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc04g074810.4.1 Solyc04g074810 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc05g053660.3.1 FMA, Solyc05g053660 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc11g010340.2.1 Solyc11g010340 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Spa_g17260 FMA bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e000161_P002 Zm00001e000161 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e009989_P001 Zm00001e009989 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Zm00001e014279_P001 SPCH, Zm00001e014279 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e015494_P002 Zm00001e015494 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e015903_P001 Zm00001e015903 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e023271_P001 Zm00001e023271 transcription factor (bHLH) 0.08 OrthoFinder output from all 47 species
Zm00001e023838_P003 Zm00001e023838 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Zm00001e024824_P001 SPCH, Zm00001e024824 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e034422_P002 Zm00001e034422 transcription factor (bHLH) 0.07 OrthoFinder output from all 47 species
Zm00001e037075_P001 SPCH, Zm00001e037075 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e038836_P001 Zm00001e038836 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e041403_P001 Zm00001e041403 transcription factor (bHLH) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 132 183
No external refs found!