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  5. LOC_Os09g28420.1

LOC_Os09g28420.1 (AMY1, ATAMY1, LOC_Os09g28420)


Aliases : AMY1, ATAMY1, LOC_Os09g28420

Description : alpha amylase


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g28420.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g28422 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0104.g044887 AMY1, ATAMY1 alpha amylase & original description: CDS=1-729 0.03 OrthoFinder output from all 47 species
Ceric.17G028300.1 AMY1, ATAMY1,... alpha amylase & original description: pacid=50617601... 0.03 OrthoFinder output from all 47 species
Cre08.g385500 AMY2, ATAMY2 Carbohydrate metabolism.starch... 0.01 OrthoFinder output from all 47 species
LOC_Os09g28400.1 AMY1, ATAMY1,... alpha amylase 0.06 OrthoFinder output from all 47 species
Len_g01238 AMY2, ATAMY2 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
MA_30833g0020 AMY1, ATAMY1 alpha amylase 0.03 OrthoFinder output from all 47 species
Mp2g22120.1 AMY2, ATAMY2 alpha amylase 0.03 OrthoFinder output from all 47 species
Nbi_g25602 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g37571 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16056 No alias alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12491 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05235 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009946_P001 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species
Zm00001e015947_P002 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species
Zm00001e034028_P002 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 53 346
IPR012850 A-amylase_bs_C 367 425
No external refs found!