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  5. LOC_Os09g28400.1

LOC_Os09g28400.1 (AMY1, ATAMY1, LOC_Os09g28400)


Aliases : AMY1, ATAMY1, LOC_Os09g28400

Description : alpha amylase


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g28400.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Adi_g020886 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021932 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022283 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16401 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28422 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g26015 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42728 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008714001 AMY2, ATAMY2 Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
GSVIVT01031740001 AMY1, ATAMY1 Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
Gb_04800 AMY2, ATAMY2 alpha amylase 0.03 OrthoFinder output from all 47 species
Gb_04803 AMY2, ATAMY2 alpha amylase 0.04 OrthoFinder output from all 47 species
LOC_Os01g25510.1 AMY1, ATAMY1,... Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os02g52700.1 AMY1, ATAMY1,... alpha amylase 0.07 OrthoFinder output from all 47 species
LOC_Os09g28420.1 AMY1, ATAMY1,... alpha amylase 0.06 OrthoFinder output from all 47 species
Len_g01238 AMY2, ATAMY2 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
MA_217935g0010 AMY1, ATAMY1 alpha amylase 0.03 OrthoFinder output from all 47 species
MA_9120657g0010 AMY2, ATAMY2 Probable alpha-amylase 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Sam_g16056 No alias alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12491 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009946_P001 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species
Zm00001e015947_P002 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species
Zm00001e034028_P002 AMY1, ATAMY1,... alpha amylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008272 sulfate transport IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 58 348
IPR012850 A-amylase_bs_C 369 427
No external refs found!