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  5. LOC_Os09g26190.1

LOC_Os09g26190.1 (LOC_Os09g26190)


Aliases : LOC_Os09g26190

Description : Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana (sp|q8vyd6|pp374_arath : 496.0)


Gene families : OG0006414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006414_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g26190.1

Target Alias Description ECC score Gene Family Method Actions
AT5G10690 No alias pentatricopeptide (PPR) repeat-containing protein / CBS... 0.05 OrthoFinder output from all 47 species
Dde_g11693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35563 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Mp1g06100.1 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.03 OrthoFinder output from all 47 species
Nbi_g20338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20397 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Pnu_g18420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020562 No alias not classified & original description: CDS=129-2003 0.04 OrthoFinder output from all 47 species
Sam_g19413 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo52692 No alias Pentatricopeptide repeat-containing protein At5g10690... 0.03 OrthoFinder output from all 47 species
Solyc08g069010.4.1 Solyc08g069010 Pentatricopeptide repeat-containing protein At5g10690... 0.08 OrthoFinder output from all 47 species
Zm00001e009851_P003 Zm00001e009851 Pentatricopeptide repeat-containing protein At5g10690... 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 157 204
IPR002885 Pentatricopeptide_repeat 23 70
IPR002885 Pentatricopeptide_repeat 235 262
IPR002885 Pentatricopeptide_repeat 271 297
No external refs found!