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  5. LOC_Os09g17840.1

LOC_Os09g17840.1 (LOC_Os09g17840)


Aliases : LOC_Os09g17840

Description : subunit alpha of co-translational insertion system Sec61 subcomplex


Gene families : OG0001704 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001704_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g17840.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Adi_g013924 No alias subunit alpha of co-translational insertion system Sec61... 0.03 OrthoFinder output from all 47 species
Adi_g117466 No alias subunit alpha of co-translational insertion system Sec61... 0.02 OrthoFinder output from all 47 species
Als_g05612 No alias subunit alpha of co-translational insertion system Sec61... 0.03 OrthoFinder output from all 47 species
Aop_g23976 No alias subunit alpha of co-translational insertion system Sec61... 0.04 OrthoFinder output from all 47 species
Cba_g32463 No alias subunit alpha of co-translational insertion system Sec61... 0.02 OrthoFinder output from all 47 species
Dde_g02233 No alias subunit alpha of co-translational insertion system Sec61... 0.02 OrthoFinder output from all 47 species
Len_g13813 No alias subunit alpha of co-translational insertion system Sec61... 0.03 OrthoFinder output from all 47 species
Ore_g29466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g007390.3.1 Solyc10g007390 subunit alpha of co-translational insertion system Sec61... 0.03 OrthoFinder output from all 47 species
Tin_g06992 No alias subunit alpha of co-translational insertion system Sec61... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019561 Translocon_Sec61/SecY_plug_dom 42 76
IPR002208 SecY/SEC61-alpha 77 468
No external refs found!