LOC_Os09g14610.1 (ATDCL2, DCL2, LOC_Os09g14610)

Aliases : ATDCL2, DCL2, LOC_Os09g14610

Description : Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica (sp|q69lx2|dcl2b_orysj : 1376.0)

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g14610.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00127000	ATDCL3, DCL3,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	OrthoFinder output from all 47 species
Als_g22807	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Aob_g19967	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Ehy_g15817	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.01	OrthoFinder output from all 47 species
Ore_g19703	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Pir_g10968	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.01	OrthoFinder output from all 47 species
Pp3c1_24960V3.1	DCL1, CAF,...	dicer-like 1	0.02	OrthoFinder output from all 47 species
Ppi_g29457	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Smo74321	DCL4, ATDCL4	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.01	OrthoFinder output from all 47 species
Solyc07g005030.4.1	DCL4, ATDCL4,...	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003100	PAZ_dom	96	229
IPR014720	dsRBD_dom	596	658
IPR000999	RNase_III_dom	461	568
IPR000999	RNase_III_dom	270	387

External Links

No external refs found!

LOC_Os09g14610.1 (ATDCL2, DCL2, LOC_Os09g14610)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation