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  5. LOC_Os09g13630.1

LOC_Os09g13630.1 (AtEMF2, EMF2, VEF2,...)


Aliases : AtEMF2, EMF2, VEF2, CYR1, LOC_Os09g13630

Description : component EMF2|VRN2|FIS2 of VRN/FIS/EMF core complexes. C2H2 zinc finger transcription factor


Gene families : OG0003135 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003135_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g13630.1

Target Alias Description ECC score Gene Family Method Actions
AT5G51230 AtEMF2, EMF2, VEF2, CYR1 VEFS-Box of polycomb protein 0.02 OrthoFinder output from all 47 species
Aev_g43558 AtEMF2, EMF2, VEF2, CYR1 component *(EMF2/VRN2/FIS2) of PRC2 histone methylation... 0.03 OrthoFinder output from all 47 species
GSVIVT01004791001 AtEMF2, EMF2, VEF2, CYR1 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
Gb_40733 AtEMF2, EMF2, VEF2, CYR1 component EMF2|VRN2|FIS2 of VRN/FIS/EMF core complexes.... 0.03 OrthoFinder output from all 47 species
Solyc03g093640.4.1 AtEMF2, EMF2,... component EMF2|VRN2|FIS2 of VRN/FIS/EMF core complexes.... 0.02 OrthoFinder output from all 47 species
Spa_g08415 No alias component *(EMF2/VRN2/FIS2) of PRC2 histone methylation... 0.03 OrthoFinder output from all 47 species
Zm00001e005699_P001 AtEMF2, EMF2,... component EMF2|VRN2|FIS2 of VRN/FIS/EMF core complexes.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR019135 Polycomb_protein_VEFS-Box 454 589
No external refs found!