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  5. LOC_Os09g12800.1

LOC_Os09g12800.1 (TAF15, LOC_Os09g12800)


Aliases : TAF15, LOC_Os09g12800

Description : component TAF15 of TFIId basal transcription regulation complex


Gene families : OG0003584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003584_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g12800.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00107550 TAF15,... RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
AT1G50300 TAF15 TBP-associated factor 15 0.02 OrthoFinder output from all 47 species
Adi_g056342 TAF15 component *(TAF15) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Ceric.10G036100.1 TAF15, Ceric.10G036100 component *(TAF15) of TFIId basal transcription... 0.04 OrthoFinder output from all 47 species
Cre07.g328400 TAF15 RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Dcu_g33405 TAF15 component *(TAF15) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
Gb_28670 TAF15 component TAF15 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species
Mp8g16600.1 TAF15 component TAF15 of TFIId basal transcription regulation complex 0.04 OrthoFinder output from all 47 species
Ore_g08780 TAF15 component *(TAF15) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
Pnu_g09881 TAF15 component *(TAF15) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Zm00001e010307_P004 TAF15, Zm00001e010307 component TAF15 of TFIId basal transcription regulation complex 0.02 OrthoFinder output from all 47 species
Zm00001e034916_P002 TAF15, Zm00001e034916 component TAF15 of TFIId basal transcription regulation complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 230 259
IPR001876 Znf_RanBP2 301 327
IPR000504 RRM_dom 101 178
No external refs found!