LOC_Os09g10940.1 (ATRABA4C, RABA4C,...)

Aliases : ATRABA4C, RABA4C, SMG1, LOC_Os09g10940

Description : A-class RAB GTPase

Gene families : OG0001718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001718_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g10940.1
Cluster	HCCA: Cluster_174

Target	Alias	Description	ECC score	Gene Family Method
AT5G47960	ATRABA4C, RABA4C, SMG1	RAB GTPase homolog A4C	0.03	OrthoFinder output from all 47 species
Adi_g005423	ATRABA4C, RABA4C, SMG1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08712	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0032.g024972	ATRABA4C, RABA4C, SMG1	A-class RAB GTPase & original description: CDS=174-839	0.02	OrthoFinder output from all 47 species
Ceric.16G048100.1	RABA4D,...	A-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Ehy_g06409	ATRABA4C, RABA4C, SMG1	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Mp3g12050.1	ATRABA4C, RABA4C, SMG1	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Msp_g03444	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g06187	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g01968	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g59186	ATRABA4C, RABA4C, SMG1	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g012180.4.1	AtRABA4a,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Zm00001e009615_P001	ATRABA4C,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
MF	GO:0008417	fucosyltransferase activity	IEP	HCCA
MF	GO:0008455	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	20	180

External Links

No external refs found!

LOC_Os09g10940.1 (ATRABA4C, RABA4C,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation