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  5. LOC_Os08g45220.1

LOC_Os08g45220.1 (PMP, LOC_Os08g45220)


Aliases : PMP, LOC_Os08g45220

Description : no hits & (original description: none)


Gene families : OG0006912 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006912_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g45220.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g01100 PMP not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g00896 PMP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G084000.1 PMP, Ceric.11G084000 not classified & original description: pacid=50594996... 0.02 OrthoFinder output from all 47 species
GSVIVT01021082001 PMP No description available 0.03 OrthoFinder output from all 47 species
Gb_34405 PMP no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp2g10880.1 PMP no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g06520 PMP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02801 PMP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05757 PMP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09431 PMP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g19003 PMP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011646 No alias not classified & original description: CDS=99-1169 0.03 OrthoFinder output from all 47 species
Sam_g13219 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13504 PMP not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!