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  5. LOC_Os08g45040.1

LOC_Os08g45040.1 (LOC_Os08g45040)


Aliases : LOC_Os08g45040

Description : pre-60S ribosomal subunit export factor (Bud20)


Gene families : OG0003346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003346_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g45040.1

Target Alias Description ECC score Gene Family Method Actions
Als_g31496 No alias pre-60S ribosomal-subunit proteome export factor... 0.03 OrthoFinder output from all 47 species
Ceric.29G086200.1 Ceric.29G086200 pre-60S ribosomal-subunit proteome export factor... 0.02 OrthoFinder output from all 47 species
Dcu_g03352 No alias pre-60S ribosomal-subunit proteome export factor... 0.06 OrthoFinder output from all 47 species
GSVIVT01033644001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_03757 No alias pre-60S ribosomal subunit export factor (Bud20) 0.03 OrthoFinder output from all 47 species
Len_g30030 No alias pre-60S ribosomal-subunit proteome export factor... 0.02 OrthoFinder output from all 47 species
Mp5g16300.1 No alias pre-60S ribosomal subunit export factor (Bud20) 0.04 OrthoFinder output from all 47 species
Nbi_g00289 No alias pre-60S ribosomal-subunit proteome export factor... 0.03 OrthoFinder output from all 47 species
Pp3c13_22060V3.1 Pp3c13_22060 zinc finger (C2H2 type) family protein 0.01 OrthoFinder output from all 47 species
Smo149266 No alias No description available 0.03 OrthoFinder output from all 47 species
Zm00001e003865_P001 Zm00001e003865 pre-60S ribosomal subunit export factor (Bud20) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043189 H4/H2A histone acetyltransferase complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902562 H4 histone acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR022755 Znf_C2H2_jaz 63 89
No external refs found!