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  5. LOC_Os08g34910.1

LOC_Os08g34910.1 (LOC_Os08g34910)


Aliases : LOC_Os08g34910

Description : pectin methylesterase


Gene families : OG0000147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g34910.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.08 OrthoFinder output from all 47 species
AMTR_s00033p00227850 evm_27.TU.AmTr_v1... Probable pectinesterase/pectinesterase inhibitor 21... 0.11 OrthoFinder output from all 47 species
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.15 OrthoFinder output from all 47 species
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.15 OrthoFinder output from all 47 species
AMTR_s00129p00035520 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00129p00070300 PME1, ATPME1,... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AT1G02810 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 OrthoFinder output from all 47 species
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.13 OrthoFinder output from all 47 species
AT2G43050 ATPMEPCRD Plant invertase/pectin methylesterase inhibitor superfamily 0.02 OrthoFinder output from all 47 species
AT3G05610 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.15 OrthoFinder output from all 47 species
AT3G06830 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.14 OrthoFinder output from all 47 species
AT3G10710 RHS12 root hair specific 12 0.05 OrthoFinder output from all 47 species
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 OrthoFinder output from all 47 species
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 OrthoFinder output from all 47 species
AT3G59010 PME61 pectin methylesterase 61 0.03 OrthoFinder output from all 47 species
AT4G15980 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.07 OrthoFinder output from all 47 species
AT4G33220 PME44, ATPME44 pectin methylesterase 44 0.03 OrthoFinder output from all 47 species
AT4G33230 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.15 OrthoFinder output from all 47 species
AT5G04960 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.06 OrthoFinder output from all 47 species
AT5G04970 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
AT5G27870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.1 OrthoFinder output from all 47 species
AT5G51500 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 OrthoFinder output from all 47 species
Aev_g08266 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aev_g12203 PME1, ATPME1 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ala_g32996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08288 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Als_g10486 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aob_g26087 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aob_g29199 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aop_g07585 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aop_g07772 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aop_g08872 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Aop_g10654 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene07394.t1 Aspi01Gene07394 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11209.t1 Aspi01Gene11209 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0133.g049315 PME44, ATPME44 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0215.g058412 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.01G014900.1 Ceric.01G014900 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ceric.19G055900.1 Ceric.19G055900 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.19G056000.1 ATPMEPCRF,... EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.30G008400.1 ATPME2, PME2,... EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ceric.30G016400.1 ATPMEPCRF,... EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.31G000300.1 PME44, ATPME44,... EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Dac_g13438 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Dac_g15947 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Dac_g22798 PME44, ATPME44 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Dac_g38611 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Dac_g45482 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Dde_g18901 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Dde_g48560 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g02809 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g07748 ATPME3, PME3 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g08496 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g09868 ATPME2, PME2 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g10683 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g14595 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g15129 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g16152 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ehy_g26672 ATPME3, PME3 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ehy_g27713 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01011699001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
GSVIVT01016667001 PME1, ATPME1 Cell wall.pectin.homogalacturonan.modification and... 0.05 OrthoFinder output from all 47 species
GSVIVT01017687001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 OrthoFinder output from all 47 species
GSVIVT01026518001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01028041001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01028264001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.12 OrthoFinder output from all 47 species
GSVIVT01028265001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.12 OrthoFinder output from all 47 species
GSVIVT01031165001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.14 OrthoFinder output from all 47 species
GSVIVT01035108001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
Gb_03174 ATPME3, PME3 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Gb_06356 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Gb_24214 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_36012 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os01g21034.1 ATPME3, PME3,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
LOC_Os03g18860.1 LOC_Os03g18860 pectin methylesterase 0.07 OrthoFinder output from all 47 species
Mp6g15150.1 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
Msp_g10078 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Nbi_g01365 PME44, ATPME44 EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Nbi_g12022 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Nbi_g13298 No alias EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Ore_g15067 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ore_g20165 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g22612 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Ppi_g07525 ATPMEPCRF, PMEPCRF EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ppi_g12664 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000947 No alias not classified & original description: CDS=1-831 0.03 OrthoFinder output from all 47 species
Sam_g07927 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Smo76314 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
Solyc01g057220.3.1 Solyc01g057220 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc01g066360.3.1 Solyc01g066360 pectin methylesterase 0.1 OrthoFinder output from all 47 species
Solyc01g066390.4.1 Solyc01g066390 Probable pectinesterase/pectinesterase inhibitor 58... 0.11 OrthoFinder output from all 47 species
Solyc01g066420.3.1 Solyc01g066420 pectin methylesterase 0.15 OrthoFinder output from all 47 species
Solyc01g099940.3.1 Solyc01g099940 pectin methylesterase 0.14 OrthoFinder output from all 47 species
Solyc01g099960.4.1 Solyc01g099960 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc02g014300.2.1 Solyc02g014300 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc03g078090.4.1 Solyc03g078090 pectin methylesterase 0.12 OrthoFinder output from all 47 species
Solyc03g078100.3.1 Solyc03g078100 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc03g083870.4.1 Solyc03g083870 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc03g123620.4.1 PME1, ATPME1,... pectin methylesterase 0.04 OrthoFinder output from all 47 species
Solyc05g054360.4.1 Solyc05g054360 pectin methylesterase 0.05 OrthoFinder output from all 47 species
Solyc06g034360.2.1 Solyc06g034360 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Solyc07g017560.4.1 Solyc07g017560 pectin methylesterase 0.14 OrthoFinder output from all 47 species
Solyc07g017600.3.1 PME44, ATPME44,... pectin methylesterase 0.05 OrthoFinder output from all 47 species
Solyc07g064180.4.1 ATPMEPCRA,... pectin methylesterase 0.02 OrthoFinder output from all 47 species
Solyc09g075350.4.1 Solyc09g075350 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Solyc11g005770.2.1 Solyc11g005770 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Solyc12g099410.2.1 Solyc12g099410 pectin methylesterase 0.13 OrthoFinder output from all 47 species
Tin_g20566 No alias EC_3.1 hydrolase acTing on ester bond & original... 0.01 OrthoFinder output from all 47 species
Zm00001e007917_P002 Zm00001e007917 pectin methylesterase 0.06 OrthoFinder output from all 47 species
Zm00001e009863_P001 Zm00001e009863 pectin methylesterase 0.14 OrthoFinder output from all 47 species
Zm00001e022184_P001 PME44, ATPME44,... pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e034231_P001 Zm00001e034231 pectin methylesterase 0.11 OrthoFinder output from all 47 species
Zm00001e035932_P003 Zm00001e035932 pectin methylesterase 0.09 OrthoFinder output from all 47 species
Zm00001e041006_P001 Zm00001e041006 pectin methylesterase 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 350 647
IPR006501 Pectinesterase_inhib_dom 81 231
No external refs found!